Wall clock time and date at job start Mon Mar 30 2020 03:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47202 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47016 * 180.02562 * 10 9 7 12 12 N 1.46891 * 109.47214 * 179.97438 * 11 10 9 13 13 C 1.46895 * 111.00467 * 179.97438 * 12 11 10 14 14 H 1.09000 * 110.34806 * 327.28932 * 13 12 11 15 15 C 1.51108 * 110.38637 * 89.69599 * 13 12 11 16 16 C 1.30523 * 111.10458 * 135.25112 * 15 13 12 17 17 C 1.51103 * 111.10726 * 0.02562 * 16 15 13 18 18 C 1.54629 * 110.39351 * 204.99906 * 13 12 11 19 19 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47039 * 300.00607 * 9 7 2 21 21 H 1.09001 * 109.46881 * 60.00168 * 9 7 2 22 22 H 1.09008 * 109.46754 * 300.00121 * 10 9 7 23 23 H 1.08996 * 109.46647 * 60.00168 * 10 9 7 24 24 H 1.08999 * 109.46696 * 299.99947 * 11 10 9 25 25 H 1.09001 * 109.47410 * 59.99622 * 11 10 9 26 26 H 1.00912 * 111.00209 * 56.04274 * 12 11 10 27 27 H 1.07998 * 124.44911 * 315.23300 * 15 13 12 28 28 H 1.08001 * 124.44740 * 180.02562 * 16 15 13 29 29 H 1.09002 * 110.38512 * 224.75524 * 17 16 15 30 30 H 1.08999 * 110.48666 * 102.42122 * 17 16 15 31 31 H 1.09005 * 111.03885 * 334.59328 * 18 13 12 32 32 H 1.09006 * 111.04067 * 98.48344 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 7 6.0412 -4.0215 0.0009 13 6 7.5096 -4.0608 0.0003 14 1 7.9113 -3.2117 -0.5527 15 6 8.0366 -4.0664 1.4165 16 6 8.9877 -4.9485 1.5606 17 6 9.2542 -5.6779 0.2644 18 6 8.0129 -5.3887 -0.6115 19 1 -0.4849 0.8401 -0.0004 20 1 3.8746 -0.6808 -0.8905 21 1 3.8752 -0.6797 0.8895 22 1 3.6585 -3.1502 0.8904 23 1 3.6579 -3.1505 -0.8897 24 1 5.9148 -2.1228 -0.8899 25 1 5.9149 -2.1226 0.8900 26 1 5.6657 -4.5383 -0.7803 27 1 7.6740 -3.4245 2.2058 28 1 9.5150 -5.1329 2.4849 29 1 9.3504 -6.7487 0.4441 30 1 10.1548 -5.2913 -0.2127 31 1 7.2666 -6.1761 -0.5054 32 1 8.2932 -5.2567 -1.6566 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698328415.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:20 Heat of formation + Delta-G solvation = 2.025616 kcal Electronic energy + Delta-G solvation = -11765.956062 eV Core-core repulsion = 9726.005982 eV Total energy + Delta-G solvation = -2039.950080 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.93668 -35.48159 -33.11250 -31.21227 -29.07322 -27.49702 -25.12597 -22.10101 -21.00330 -19.89375 -18.60449 -16.69279 -16.06760 -15.87193 -14.89968 -14.24135 -13.77223 -13.40453 -12.82858 -12.46712 -11.99272 -11.86718 -11.71301 -11.40929 -11.34785 -11.16997 -10.83901 -10.75540 -9.92587 -9.70436 -9.53077 -9.14012 -9.01237 -8.50799 -8.20803 -6.01181 -3.98756 2.26586 3.32372 3.39682 3.43942 4.43749 4.47937 4.53154 4.61858 5.02310 5.27464 5.32781 5.40824 5.50232 5.64655 5.68211 5.77467 5.84578 5.96332 6.05774 6.20936 6.48310 6.58393 6.61850 6.87412 6.95028 7.26553 7.39144 7.47340 7.61651 7.83623 8.58394 9.04505 9.61584 11.12477 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.079203 B = 0.005864 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.438621 B = 4774.111035 C = 4930.098635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.056 3.944 12 N -0.682 5.682 13 C 0.100 3.900 14 H 0.054 0.946 15 C -0.132 4.132 16 C -0.182 4.182 17 C -0.095 4.095 18 C -0.129 4.129 19 H 0.262 0.738 20 H 0.009 0.991 21 H 0.015 0.985 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.023 0.977 25 H 0.066 0.934 26 H 0.340 0.660 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.740 -8.335 -0.281 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.073 4.073 12 N -0.313 5.313 13 C -0.009 4.009 14 H 0.072 0.928 15 C -0.151 4.151 16 C -0.201 4.201 17 C -0.133 4.133 18 C -0.167 4.167 19 H 0.072 0.928 20 H 0.027 0.973 21 H 0.034 0.966 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.084 0.916 26 H 0.159 0.841 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.521 -8.279 0.385 19.382 hybrid contribution 0.499 1.282 -0.836 1.610 sum 18.020 -6.997 -0.451 19.336 Atomic orbital electron populations 1.69922 1.06299 1.26812 1.51408 1.25042 0.94731 0.99163 0.94650 0.86766 0.80370 0.83640 0.78426 1.20377 1.21394 1.19048 1.21163 0.89545 0.94464 1.50474 0.91024 1.19548 0.97147 0.92334 0.96083 1.21447 0.91130 0.99620 1.01566 1.22209 0.97592 0.87741 0.99751 1.60623 1.05784 1.15071 1.49835 1.21441 0.88784 0.96829 0.93865 0.92826 1.23248 0.96073 0.98426 0.97335 1.23150 0.99943 0.98830 0.98164 1.21263 0.97874 1.00192 0.93941 1.22710 0.97787 0.97391 0.98776 0.92792 0.97317 0.96629 0.91934 0.93055 0.95834 0.91556 0.84132 0.85984 0.86052 0.91351 0.91053 0.90093 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.96 55.43 0.77 -27.67 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -2.04 5.41 -26.73 -0.14 -2.18 16 11 C 0.06 0.94 5.53 -3.83 -0.02 0.92 16 12 N -0.68 -10.00 6.32 -106.84 -0.67 -10.68 16 13 C 0.10 1.27 3.23 -67.81 -0.22 1.05 16 14 H 0.05 0.69 7.82 -51.93 -0.41 0.29 16 15 C -0.13 -1.65 10.38 -35.69 -0.37 -2.02 16 16 C -0.18 -1.94 10.77 -35.70 -0.38 -2.33 16 17 C -0.10 -0.89 6.81 -26.82 -0.18 -1.07 16 18 C -0.13 -1.32 6.60 -25.01 -0.17 -1.48 16 19 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 20 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 21 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 22 H 0.06 1.33 8.14 -51.92 -0.42 0.90 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.02 0.39 8.07 -51.93 -0.42 -0.03 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.34 4.62 8.37 -39.29 -0.33 4.29 16 27 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 264.75 15.07 3.99 3.99 Total: -1.00 -30.90 264.75 -7.92 -38.82 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.31 Total: -0.70 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -2.03 Total: -21.22 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.10 Total: -38.35 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.90 -7.92 -38.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698328415.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.847 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds