Wall clock time and date at job start Mon Mar 30 2020 03:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47202 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47016 * 180.02562 * 10 9 7 12 12 N 1.46891 * 109.47214 * 179.97438 * 11 10 9 13 13 C 1.46895 * 111.00467 * 179.97438 * 12 11 10 14 14 H 1.09000 * 110.34806 * 327.28932 * 13 12 11 15 15 C 1.51108 * 110.38637 * 89.69599 * 13 12 11 16 16 C 1.30523 * 111.10458 * 135.25112 * 15 13 12 17 17 C 1.51103 * 111.10726 * 0.02562 * 16 15 13 18 18 C 1.54629 * 110.39351 * 204.99906 * 13 12 11 19 19 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47039 * 300.00607 * 9 7 2 21 21 H 1.09001 * 109.46881 * 60.00168 * 9 7 2 22 22 H 1.09008 * 109.46754 * 300.00121 * 10 9 7 23 23 H 1.08996 * 109.46647 * 60.00168 * 10 9 7 24 24 H 1.08999 * 109.46696 * 299.99947 * 11 10 9 25 25 H 1.09001 * 109.47410 * 59.99622 * 11 10 9 26 26 H 1.00912 * 111.00209 * 56.04274 * 12 11 10 27 27 H 1.07998 * 124.44911 * 315.23300 * 15 13 12 28 28 H 1.08001 * 124.44740 * 180.02562 * 16 15 13 29 29 H 1.09002 * 110.38512 * 224.75524 * 17 16 15 30 30 H 1.08999 * 110.48666 * 102.42122 * 17 16 15 31 31 H 1.09005 * 111.03885 * 334.59328 * 18 13 12 32 32 H 1.09006 * 111.04067 * 98.48344 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 7 6.0412 -4.0215 0.0009 13 6 7.5096 -4.0608 0.0003 14 1 7.9113 -3.2117 -0.5527 15 6 8.0366 -4.0664 1.4165 16 6 8.9877 -4.9485 1.5606 17 6 9.2542 -5.6779 0.2644 18 6 8.0129 -5.3887 -0.6115 19 1 -0.4849 0.8401 -0.0004 20 1 3.8746 -0.6808 -0.8905 21 1 3.8752 -0.6797 0.8895 22 1 3.6585 -3.1502 0.8904 23 1 3.6579 -3.1505 -0.8897 24 1 5.9148 -2.1228 -0.8899 25 1 5.9149 -2.1226 0.8900 26 1 5.6657 -4.5383 -0.7803 27 1 7.6740 -3.4245 2.2058 28 1 9.5150 -5.1329 2.4849 29 1 9.3504 -6.7487 0.4441 30 1 10.1548 -5.2913 -0.2127 31 1 7.2666 -6.1761 -0.5054 32 1 8.2932 -5.2567 -1.6566 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698328415.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:20 Heat of formation + Delta-G solvation = -18.075481 kcal Electronic energy + Delta-G solvation = -11766.827711 eV Core-core repulsion = 9726.005982 eV Total energy + Delta-G solvation = -2040.821729 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.85504 -36.92801 -35.01815 -33.02708 -29.94287 -28.99578 -26.51422 -23.76207 -22.19897 -21.35233 -19.49905 -18.89436 -17.06710 -16.82567 -16.46959 -16.00688 -15.23968 -14.84130 -14.37458 -14.04335 -13.47857 -13.13744 -12.78477 -12.74669 -12.49391 -12.31988 -12.15366 -12.09375 -11.79995 -11.51453 -11.41944 -11.21072 -10.77050 -9.88282 -9.34271 -8.30103 -6.34578 1.35026 1.37511 1.39481 1.49862 2.35987 3.05040 3.31793 3.67362 3.81741 4.17406 4.24301 4.30098 4.47949 4.55938 4.64559 4.69887 4.88812 4.94312 4.96802 5.01510 5.10761 5.16366 5.27659 5.50727 5.59440 5.64065 5.65560 5.99243 6.13796 6.29169 6.50695 6.73599 7.30118 8.87034 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.079203 B = 0.005864 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.438621 B = 4774.111035 C = 4930.098635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.070 3.930 12 N -0.689 5.689 13 C 0.098 3.902 14 H 0.051 0.949 15 C -0.168 4.168 16 C -0.166 4.166 17 C -0.095 4.095 18 C -0.125 4.125 19 H 0.267 0.733 20 H 0.019 0.981 21 H 0.019 0.981 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.346 0.654 27 H 0.111 0.889 28 H 0.138 0.862 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.406 -8.121 -0.591 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.059 4.059 12 N -0.320 5.320 13 C -0.012 4.012 14 H 0.069 0.931 15 C -0.186 4.186 16 C -0.184 4.184 17 C -0.132 4.132 18 C -0.163 4.163 19 H 0.075 0.925 20 H 0.037 0.963 21 H 0.037 0.963 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.165 0.835 27 H 0.129 0.871 28 H 0.155 0.845 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.206 -8.090 0.073 21.765 hybrid contribution -0.370 1.099 -0.720 1.365 sum 19.836 -6.991 -0.647 21.041 Atomic orbital electron populations 1.70079 1.08371 1.28219 1.52702 1.26069 0.95661 1.03686 0.94023 0.85597 0.79424 0.77955 0.79293 1.18956 1.20837 1.17078 1.21520 0.92242 0.93100 1.50438 0.95237 1.19494 0.93837 0.95038 0.96456 1.21271 0.93930 0.96931 1.00747 1.21923 0.94591 0.89352 1.00050 1.60562 1.07562 1.13591 1.50332 1.21542 0.87097 0.98170 0.94351 0.93079 1.23256 0.97961 1.00137 0.97281 1.23470 0.98422 0.97196 0.99336 1.21334 0.97920 1.01011 0.92969 1.22720 0.98044 0.95795 0.99738 0.92453 0.96258 0.96288 0.93434 0.93294 0.95018 0.91745 0.83539 0.87130 0.84472 0.89859 0.89490 0.90385 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 2 C 0.00 0.12 5.47 84.65 0.46 0.59 16 3 Si 0.95 45.12 27.47 68.60 1.88 47.01 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 7 C -0.54 -32.00 9.66 25.60 0.25 -31.75 16 8 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 9 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 10 C -0.09 -3.70 5.41 30.59 0.17 -3.53 16 11 C 0.07 2.28 5.53 86.30 0.48 2.75 16 12 N -0.69 -19.40 6.32 -491.93 -3.11 -22.51 16 13 C 0.10 2.30 3.23 44.85 0.14 2.44 16 14 H 0.05 1.22 7.82 -2.39 -0.02 1.21 16 15 C -0.17 -3.96 10.38 26.27 0.27 -3.69 16 16 C -0.17 -3.12 10.77 26.27 0.28 -2.84 16 17 C -0.10 -1.47 6.81 30.54 0.21 -1.26 16 18 C -0.13 -2.24 6.60 31.71 0.21 -2.03 16 19 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 20 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 21 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 22 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.03 0.98 8.07 -2.39 -0.02 0.96 16 25 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.35 8.95 8.37 -89.68 -0.75 8.20 16 27 H 0.11 2.79 8.06 -2.91 -0.02 2.77 16 28 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.45 8.04 -2.38 -0.02 1.43 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -66.84 264.75 1.93 -64.91 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.26 Total: 11.18 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 2.59 Total: -39.69 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -2.81 Total: -83.40 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.01 kcal Total: -66.84 1.93 -64.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698328415.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.833 kcal (2) G-P(sol) polarization free energy of solvation -66.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds