Wall clock time and date at job start Mon Mar 30 2020 03:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99834 * 2 1 4 4 H 1.48499 * 109.47043 * 270.00659 * 3 2 1 5 5 H 1.48503 * 109.46886 * 30.00286 * 3 2 1 6 6 H 1.48499 * 109.46994 * 150.00094 * 3 2 1 7 7 C 1.37875 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00256 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99849 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47187 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47078 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.47052 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00227 * 179.97438 * 12 11 10 14 14 H 1.09001 * 110.33971 * 32.71128 * 13 12 11 15 15 C 1.51097 * 110.48068 * 270.35980 * 13 12 11 16 16 C 1.30528 * 111.10203 * 224.69808 * 15 13 12 17 17 C 1.51106 * 111.10324 * 0.02562 * 16 15 13 18 18 C 1.54627 * 110.38751 * 154.99712 * 13 12 11 19 19 H 0.96998 * 120.00514 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.46984 * 59.99879 * 9 7 2 21 21 H 1.09000 * 109.47407 * 299.99830 * 9 7 2 22 22 H 1.09006 * 109.46721 * 60.00375 * 10 9 7 23 23 H 1.09000 * 109.47345 * 300.00525 * 10 9 7 24 24 H 1.08990 * 109.47420 * 60.00391 * 11 10 9 25 25 H 1.09005 * 109.46740 * 299.99957 * 11 10 9 26 26 H 1.00905 * 110.99936 * 56.04276 * 12 11 10 27 27 H 1.07996 * 124.45390 * 44.72215 * 15 13 12 28 28 H 1.07997 * 124.44973 * 180.26405 * 16 15 13 29 29 H 1.09003 * 110.38579 * 135.24581 * 17 16 15 30 30 H 1.09001 * 110.38515 * 257.50826 * 17 16 15 31 31 H 1.09002 * 111.04087 * 25.52642 * 18 13 12 32 32 H 1.09001 * 111.04142 * 261.59065 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 7 6.0413 -4.0214 -0.0014 13 6 7.5098 -4.0606 -0.0020 14 1 7.9117 -3.2111 0.5503 15 6 8.0380 -4.0655 -1.4177 16 6 8.9901 -4.9468 -1.5610 17 6 9.2551 -5.6770 -0.2649 18 6 8.0135 -5.3882 0.6101 19 1 -0.4851 0.8400 0.0004 20 1 3.8752 -0.6803 0.8889 21 1 3.8745 -0.6800 -0.8911 22 1 3.6579 -3.1505 -0.8908 23 1 3.6586 -3.1502 0.8892 24 1 5.9149 -2.1226 0.8890 25 1 5.9149 -2.1226 -0.8910 26 1 5.6658 -4.5374 -0.7830 27 1 7.6757 -3.4238 -2.2072 28 1 9.5215 -5.1275 -2.4836 29 1 9.3524 -6.7476 -0.4453 30 1 10.1555 -5.2896 0.2119 31 1 7.2680 -6.1761 0.5031 32 1 8.2933 -5.2559 1.6553 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698328418.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:23 Heat of formation + Delta-G solvation = -18.847983 kcal Electronic energy + Delta-G solvation = -11771.166578 eV Core-core repulsion = 9730.311351 eV Total energy + Delta-G solvation = -2040.855227 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.92040 -36.89944 -34.99300 -32.99074 -29.90456 -29.02171 -26.49975 -23.75272 -22.11393 -21.27538 -19.82040 -18.91578 -17.21828 -16.68905 -16.18543 -16.14955 -15.09036 -14.84531 -14.41004 -13.95404 -13.46641 -13.09915 -12.85359 -12.69647 -12.47309 -12.38402 -12.25671 -12.05296 -11.80835 -11.50792 -11.41705 -11.19565 -10.76878 -10.07401 -9.24893 -8.29855 -6.34360 1.29356 1.35261 1.37691 1.50065 2.36198 3.05286 3.27486 3.78534 3.80334 4.15277 4.28449 4.34002 4.45554 4.57757 4.63262 4.71016 4.89651 4.90263 4.98112 5.03713 5.10297 5.26445 5.34150 5.51226 5.56519 5.60207 5.65853 5.88329 6.14529 6.29522 6.49440 6.73882 7.30329 8.87299 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.079532 B = 0.005862 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.977246 B = 4775.550273 C = 4929.241496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.069 3.931 12 N -0.686 5.686 13 C 0.101 3.899 14 H 0.079 0.921 15 C -0.220 4.220 16 C -0.147 4.147 17 C -0.101 4.101 18 C -0.111 4.111 19 H 0.267 0.733 20 H 0.020 0.980 21 H 0.018 0.982 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.068 0.932 25 H 0.030 0.970 26 H 0.343 0.657 27 H 0.116 0.884 28 H 0.138 0.862 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.487 -8.012 -1.501 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.060 4.060 12 N -0.315 5.315 13 C -0.009 4.009 14 H 0.097 0.903 15 C -0.240 4.240 16 C -0.166 4.166 17 C -0.138 4.138 18 C -0.149 4.149 19 H 0.075 0.925 20 H 0.038 0.962 21 H 0.037 0.963 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.161 0.839 27 H 0.134 0.866 28 H 0.156 0.844 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.274 -7.976 -0.786 21.801 hybrid contribution -0.327 1.082 -1.059 1.550 sum 19.947 -6.894 -1.845 21.185 Atomic orbital electron populations 1.70076 1.08380 1.28224 1.52714 1.26071 0.95660 1.03695 0.94024 0.85595 0.79465 0.77942 0.79257 1.19047 1.20830 1.16979 1.21523 0.92268 0.93089 1.50428 0.95263 1.19493 0.93812 0.95033 0.96472 1.21278 0.94027 0.96929 1.00706 1.21916 0.94523 0.89410 1.00121 1.60660 1.07476 1.13429 1.49982 1.21593 0.86921 0.99252 0.93132 0.90259 1.24006 1.00392 1.01004 0.98590 1.23539 0.97205 0.96593 0.99227 1.21439 0.98306 1.01016 0.93050 1.22498 0.96943 0.95960 0.99531 0.92457 0.96157 0.96339 0.93552 0.93275 0.91378 0.95191 0.83882 0.86628 0.84434 0.89790 0.89445 0.90973 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 2 C 0.00 0.12 5.47 84.65 0.46 0.58 16 3 Si 0.95 45.09 27.47 68.60 1.88 46.97 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 7 C -0.54 -32.00 9.66 25.60 0.25 -31.75 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.09 -3.72 5.41 30.60 0.17 -3.55 16 11 C 0.07 2.24 5.53 86.30 0.48 2.72 16 12 N -0.69 -19.30 6.31 -491.91 -3.10 -22.40 16 13 C 0.10 2.34 3.22 44.85 0.14 2.49 16 14 H 0.08 1.91 7.82 -2.39 -0.02 1.89 16 15 C -0.22 -4.68 10.10 26.26 0.27 -4.42 16 16 C -0.15 -2.54 10.78 26.26 0.28 -2.25 16 17 C -0.10 -1.53 6.81 30.53 0.21 -1.32 16 18 C -0.11 -2.13 6.89 31.70 0.22 -1.92 16 19 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 20 H 0.02 0.96 7.20 -2.38 -0.02 0.94 16 21 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 22 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 23 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 25 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.34 9.38 8.44 -89.69 -0.76 8.62 16 27 H 0.12 2.54 8.06 -2.91 -0.02 2.51 16 28 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -66.11 264.86 1.93 -64.17 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.26 Total: 11.98 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 2.59 Total: -39.80 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.80 Total: -83.32 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -66.11 1.93 -64.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698328418.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.327 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds