Wall clock time and date at job start Mon Mar 30 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99820 * 2 1 4 4 H 1.48500 * 109.46784 * 269.99154 * 3 2 1 5 5 H 1.48490 * 109.47573 * 29.99493 * 3 2 1 6 6 H 1.48506 * 109.47096 * 149.99881 * 3 2 1 7 7 C 1.37874 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00343 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47313 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46605 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99358 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46950 * 180.02562 * 12 11 10 14 14 H 1.09002 * 115.56020 * 330.69854 * 13 12 11 15 15 C 1.53000 * 117.49776 * 116.39272 * 13 12 11 16 16 C 1.52992 * 117.49631 * 185.01379 * 13 12 11 17 17 C 1.52996 * 138.59250 * 23.39938 * 16 13 12 18 18 C 1.52993 * 138.59092 * 121.62022 * 16 13 12 19 19 H 0.96998 * 119.99741 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.46751 * 59.99735 * 9 7 2 21 21 H 1.08995 * 109.47179 * 300.00381 * 9 7 2 22 22 H 1.08996 * 109.46592 * 60.00608 * 10 9 7 23 23 H 1.09000 * 109.47141 * 300.00105 * 10 9 7 24 24 H 1.00900 * 111.00173 * 303.95160 * 11 10 9 25 25 H 1.08997 * 109.47394 * 60.00319 * 12 11 10 26 26 H 1.08999 * 109.47200 * 299.99820 * 12 11 10 27 27 H 1.08999 * 117.49753 * 359.97438 * 15 13 12 28 28 H 1.09004 * 117.49237 * 214.97568 * 15 13 12 29 29 H 1.08997 * 117.49923 * 238.38173 * 17 16 13 30 30 H 1.08994 * 117.49389 * 23.40750 * 17 16 13 31 31 H 1.09005 * 117.49809 * 336.59247 * 18 16 13 32 32 H 1.09003 * 117.50113 * 121.60946 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5107 -4.9342 -0.0001 12 6 2.4353 -6.0759 0.0005 13 6 1.6351 -7.3801 -0.0008 14 1 0.6578 -7.3327 0.4794 15 6 1.7813 -8.2973 -1.2167 16 6 2.4180 -8.6891 0.1182 17 6 3.7696 -9.1740 0.6462 18 6 2.4859 -9.9054 1.0438 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8902 22 1 2.8718 -3.6043 0.8906 23 1 2.8720 -3.6044 -0.8894 24 1 0.8740 -4.9845 0.7811 25 1 3.0626 -6.0350 0.8909 26 1 3.0639 -6.0348 -0.8890 27 1 2.4470 -7.9714 -2.0158 28 1 0.8999 -8.8533 -1.5363 29 1 4.4355 -9.6727 -0.0579 30 1 4.2594 -8.5671 1.4077 31 1 2.1313 -9.7798 2.0668 32 1 2.3073 -10.8854 0.6012 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700162399.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:22 Heat of formation + Delta-G solvation = 42.666285 kcal Electronic energy + Delta-G solvation = -11562.832809 eV Core-core repulsion = 9524.645041 eV Total energy + Delta-G solvation = -2038.187768 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.55319 -35.72758 -33.25187 -32.23749 -29.36387 -25.63178 -23.24714 -22.51645 -21.02669 -20.45497 -18.80895 -16.31165 -15.24086 -15.21381 -15.07097 -14.62388 -14.32111 -13.38685 -12.80555 -12.47072 -12.08750 -11.66252 -11.47698 -11.18769 -11.04808 -10.89128 -10.54433 -10.12105 -9.97931 -9.92021 -9.73698 -9.31242 -9.11030 -8.33242 -7.76984 -5.97875 -4.00449 3.33619 3.39479 3.42753 3.60775 3.67264 4.22259 4.46669 4.71490 4.85067 5.06311 5.38022 5.47618 5.50234 5.52350 5.56532 5.64790 5.74989 5.82669 5.92657 5.96458 6.01180 6.36457 6.37574 6.44683 7.00211 7.51240 7.75444 7.85418 7.99059 8.11080 8.45797 9.06850 9.63234 11.13648 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.092332 B = 0.005156 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.179709 B = 5428.757798 C = 5564.426424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.690 5.690 12 C 0.089 3.911 13 C -0.088 4.088 14 H 0.107 0.893 15 C -0.120 4.120 16 C -0.235 4.235 17 C -0.132 4.132 18 C -0.133 4.133 19 H 0.260 0.740 20 H 0.026 0.974 21 H 0.014 0.986 22 H 0.015 0.985 23 H 0.058 0.942 24 H 0.336 0.664 25 H 0.026 0.974 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 -16.302 0.980 16.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.321 5.321 12 C -0.041 4.041 13 C -0.107 4.107 14 H 0.125 0.875 15 C -0.157 4.157 16 C -0.236 4.236 17 C -0.169 4.169 18 C -0.170 4.170 19 H 0.070 0.930 20 H 0.044 0.956 21 H 0.032 0.968 22 H 0.033 0.967 23 H 0.076 0.924 24 H 0.153 0.847 25 H 0.044 0.956 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.458 -16.178 0.296 16.783 hybrid contribution 0.762 0.946 0.910 1.518 sum 5.221 -15.231 1.205 16.146 Atomic orbital electron populations 1.69978 1.06039 1.26574 1.50703 1.25004 0.94842 0.99212 0.95304 0.86581 0.79785 0.83433 0.78120 1.20618 1.21215 1.19930 1.21186 0.92991 0.91043 1.50835 0.92768 1.19076 0.94037 0.90417 0.97752 1.22160 0.97001 0.88480 0.98609 1.60589 1.19758 1.02006 1.49716 1.21471 0.93880 0.88663 1.00062 1.22102 0.99015 0.88695 1.00849 0.87525 1.22779 1.01259 1.01558 0.90123 1.21593 1.01413 0.98701 1.01855 1.22586 0.89692 1.02254 1.02343 1.22618 1.00974 0.94589 0.98805 0.92997 0.95604 0.96784 0.96711 0.92376 0.84715 0.95644 0.91232 0.88595 0.88829 0.88846 0.88777 0.88834 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16 11 N -0.69 -12.84 6.50 -113.77 -0.74 -13.58 16 12 C 0.09 1.38 5.97 -3.82 -0.02 1.35 16 13 C -0.09 -1.18 5.95 -90.62 -0.54 -1.72 16 14 H 0.11 1.42 8.13 -51.93 -0.42 1.00 16 15 C -0.12 -1.44 10.18 -26.73 -0.27 -1.71 16 16 C -0.24 -2.77 5.39 -154.52 -0.83 -3.61 16 17 C -0.13 -1.35 10.53 -26.73 -0.28 -1.63 16 18 C -0.13 -1.30 10.53 -26.74 -0.28 -1.58 16 19 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 20 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 22 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 23 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.34 5.98 8.72 -39.29 -0.34 5.64 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 1.09 7.87 -51.93 -0.41 0.68 16 27 H 0.10 1.12 8.03 -51.93 -0.42 0.71 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 274.85 15.07 4.14 4.14 Total: -1.00 -30.32 274.85 -9.05 -39.37 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.36 Total: 0.54 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -2.81 Total: -20.79 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.00 Total: -40.13 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.32 -9.05 -39.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700162399.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.038 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds