Wall clock time and date at job start Mon Mar 30 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99820 * 2 1 4 4 H 1.48500 * 109.46784 * 269.99154 * 3 2 1 5 5 H 1.48490 * 109.47573 * 29.99493 * 3 2 1 6 6 H 1.48506 * 109.47096 * 149.99881 * 3 2 1 7 7 C 1.37874 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00343 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47313 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46605 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99358 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46950 * 180.02562 * 12 11 10 14 14 H 1.09002 * 115.56020 * 330.69854 * 13 12 11 15 15 C 1.53000 * 117.49776 * 116.39272 * 13 12 11 16 16 C 1.52992 * 117.49631 * 185.01379 * 13 12 11 17 17 C 1.52996 * 138.59250 * 23.39938 * 16 13 12 18 18 C 1.52993 * 138.59092 * 121.62022 * 16 13 12 19 19 H 0.96998 * 119.99741 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.46751 * 59.99735 * 9 7 2 21 21 H 1.08995 * 109.47179 * 300.00381 * 9 7 2 22 22 H 1.08996 * 109.46592 * 60.00608 * 10 9 7 23 23 H 1.09000 * 109.47141 * 300.00105 * 10 9 7 24 24 H 1.00900 * 111.00173 * 303.95160 * 11 10 9 25 25 H 1.08997 * 109.47394 * 60.00319 * 12 11 10 26 26 H 1.08999 * 109.47200 * 299.99820 * 12 11 10 27 27 H 1.08999 * 117.49753 * 359.97438 * 15 13 12 28 28 H 1.09004 * 117.49237 * 214.97568 * 15 13 12 29 29 H 1.08997 * 117.49923 * 238.38173 * 17 16 13 30 30 H 1.08994 * 117.49389 * 23.40750 * 17 16 13 31 31 H 1.09005 * 117.49809 * 336.59247 * 18 16 13 32 32 H 1.09003 * 117.50113 * 121.60946 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5107 -4.9342 -0.0001 12 6 2.4353 -6.0759 0.0005 13 6 1.6351 -7.3801 -0.0008 14 1 0.6578 -7.3327 0.4794 15 6 1.7813 -8.2973 -1.2167 16 6 2.4180 -8.6891 0.1182 17 6 3.7696 -9.1740 0.6462 18 6 2.4859 -9.9054 1.0438 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8902 22 1 2.8718 -3.6043 0.8906 23 1 2.8720 -3.6044 -0.8894 24 1 0.8740 -4.9845 0.7811 25 1 3.0626 -6.0350 0.8909 26 1 3.0639 -6.0348 -0.8890 27 1 2.4470 -7.9714 -2.0158 28 1 0.8999 -8.8533 -1.5363 29 1 4.4355 -9.6727 -0.0579 30 1 4.2594 -8.5671 1.4077 31 1 2.1313 -9.7798 2.0668 32 1 2.3073 -10.8854 0.6012 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700162399.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:22 Heat of formation + Delta-G solvation = 24.284483 kcal Electronic energy + Delta-G solvation = -11563.629904 eV Core-core repulsion = 9524.645041 eV Total energy + Delta-G solvation = -2038.984863 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.52301 -37.27002 -35.10620 -33.56823 -31.20439 -27.33076 -25.00246 -23.29971 -22.55232 -21.86505 -19.77724 -18.52129 -16.81697 -16.47205 -16.24773 -15.88127 -15.62750 -14.95168 -14.56880 -14.08658 -13.77002 -13.07210 -12.87512 -12.57157 -12.41097 -12.34721 -12.22793 -11.93849 -11.45793 -11.33766 -10.87587 -10.79714 -10.66595 -10.56135 -9.29856 -8.20792 -6.32743 1.40612 1.42546 1.53526 2.40341 2.68453 2.79120 3.12612 3.25342 3.60576 3.88621 3.98959 4.38875 4.40145 4.54095 4.59546 4.63488 4.74826 4.76784 4.83146 4.89595 4.96981 5.01210 5.04473 5.26138 5.30115 5.43574 5.65455 5.77405 6.12180 6.25656 6.51478 6.84263 7.36712 8.91566 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.092332 B = 0.005156 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.179709 B = 5428.757798 C = 5564.426424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.031 3.969 10 C 0.083 3.917 11 N -0.695 5.695 12 C 0.095 3.905 13 C -0.105 4.105 14 H 0.103 0.897 15 C -0.118 4.118 16 C -0.247 4.247 17 C -0.131 4.131 18 C -0.122 4.122 19 H 0.264 0.736 20 H -0.005 1.005 21 H -0.008 1.008 22 H 0.018 0.982 23 H 0.058 0.942 24 H 0.339 0.661 25 H 0.027 0.973 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -16.955 1.109 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.046 4.046 11 N -0.327 5.327 12 C -0.034 4.034 13 C -0.124 4.124 14 H 0.122 0.878 15 C -0.154 4.154 16 C -0.247 4.247 17 C -0.168 4.168 18 C -0.159 4.159 19 H 0.073 0.927 20 H 0.013 0.987 21 H 0.011 0.989 22 H 0.037 0.963 23 H 0.076 0.924 24 H 0.157 0.843 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.739 -16.855 0.426 17.811 hybrid contribution 0.338 1.086 0.878 1.437 sum 6.077 -15.770 1.304 16.950 Atomic orbital electron populations 1.70113 1.07872 1.27870 1.51355 1.25993 0.95781 1.03436 0.94512 0.85392 0.78596 0.78151 0.78558 1.19692 1.20598 1.18699 1.21616 0.93555 0.92251 1.51097 0.92135 1.18932 0.94314 0.92281 0.95138 1.21789 0.95659 0.88402 0.98719 1.60502 1.20304 1.01736 1.50110 1.21446 0.93561 0.88418 0.99981 1.21946 0.99108 0.88431 1.02905 0.87850 1.22822 1.01771 1.00889 0.89954 1.21715 1.03026 0.98304 1.01688 1.22729 0.89600 1.02044 1.02383 1.22770 1.00015 0.94426 0.98664 0.92683 0.98679 0.98941 0.96336 0.92395 0.84326 0.95460 0.91418 0.88586 0.87725 0.87535 0.88768 0.88301 0.87245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 2 C 0.00 0.04 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -31.89 9.11 25.60 0.23 -31.66 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.69 5.23 29.85 0.16 1.85 16 10 C 0.08 3.65 5.62 86.30 0.49 4.14 16 11 N -0.70 -25.98 6.50 -513.87 -3.34 -29.32 16 12 C 0.09 2.88 5.97 86.30 0.51 3.39 16 13 C -0.11 -2.73 5.95 -10.79 -0.06 -2.79 16 14 H 0.10 2.71 8.13 -2.39 -0.02 2.69 16 15 C -0.12 -2.64 10.18 30.59 0.31 -2.33 16 16 C -0.25 -5.36 5.39 -52.19 -0.28 -5.64 16 17 C -0.13 -2.36 10.53 30.59 0.32 -2.04 16 18 C -0.12 -2.07 10.53 30.59 0.32 -1.75 16 19 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 20 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 21 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 22 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 24 H 0.34 12.23 8.72 -89.69 -0.78 11.45 16 25 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 2.07 7.87 -2.39 -0.02 2.05 16 27 H 0.10 2.12 8.03 -2.39 -0.02 2.10 16 28 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -64.33 274.85 1.73 -62.60 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.29 Total: 13.73 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 2.46 Total: -36.32 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -3.06 Total: -86.74 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.33 1.73 -62.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700162399.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.889 kcal (2) G-P(sol) polarization free energy of solvation -64.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds