Wall clock time and date at job start Mon Mar 30 2020 02:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48497 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46838 * 299.99997 * 3 2 1 6 6 H 1.48505 * 109.46977 * 59.99309 * 3 2 1 7 7 C 1.37878 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47039 * 180.02562 * 12 11 10 14 14 H 1.08998 * 115.55652 * 29.27879 * 13 12 11 15 15 C 1.53006 * 117.49822 * 243.60848 * 13 12 11 16 16 C 1.52994 * 59.99879 * 252.50936 * 15 13 12 17 17 C 1.52988 * 138.58697 * 130.88895 * 16 15 13 18 18 C 1.52996 * 138.58873 * 229.10335 * 16 15 13 19 19 H 0.97007 * 120.00038 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.47327 * 60.00338 * 9 7 2 21 21 H 1.08996 * 109.47062 * 299.99195 * 9 7 2 22 22 H 1.09004 * 109.46889 * 60.00274 * 10 9 7 23 23 H 1.08995 * 109.47384 * 299.99914 * 10 9 7 24 24 H 1.00901 * 111.00067 * 303.95263 * 11 10 9 25 25 H 1.09001 * 109.46798 * 300.00327 * 12 11 10 26 26 H 1.08998 * 109.46961 * 60.00043 * 12 11 10 27 27 H 1.08996 * 117.50013 * 359.97438 * 15 13 12 28 28 H 1.09000 * 117.50113 * 144.99772 * 15 13 12 29 29 H 1.08998 * 117.50333 * 238.38308 * 17 16 15 30 30 H 1.08998 * 117.50309 * 23.40635 * 17 16 15 31 31 H 1.08998 * 117.50216 * 336.60147 * 18 16 15 32 32 H 1.08997 * 117.49613 * 121.61881 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0018 13 6 1.6350 -7.3800 0.0018 14 1 0.6582 -7.3324 -0.4795 15 6 1.7793 -8.2974 1.2178 16 6 2.4179 -8.6892 -0.1161 17 6 3.7702 -9.1739 -0.6423 18 6 2.4872 -9.9054 -1.0418 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8718 -3.6043 0.8906 23 1 2.8718 -3.6044 -0.8894 24 1 0.8744 -4.9841 0.7828 25 1 3.0631 -6.0353 -0.8882 26 1 3.0630 -6.0345 0.8918 27 1 2.4445 -7.9720 2.0176 28 1 0.8974 -8.8531 1.5365 29 1 4.2612 -8.5670 -1.4029 30 1 4.4352 -9.6727 0.0628 31 1 2.3079 -10.8854 -0.5996 32 1 2.1340 -9.7796 -2.0653 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700162402.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:25 Heat of formation + Delta-G solvation = 24.024082 kcal Electronic energy + Delta-G solvation = -11564.516064 eV Core-core repulsion = 9525.519910 eV Total energy + Delta-G solvation = -2038.996155 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.53541 -37.26399 -35.11015 -33.57011 -31.19039 -27.33730 -25.04276 -23.29145 -22.51851 -21.82742 -19.78659 -18.52184 -17.07996 -16.47656 -16.16427 -15.83820 -15.40810 -14.96962 -14.29683 -14.24950 -14.05822 -13.13105 -12.88724 -12.53221 -12.43080 -12.32590 -12.10768 -11.96848 -11.47577 -11.31404 -10.85621 -10.80906 -10.65770 -10.57230 -9.32605 -8.21003 -6.32843 1.40583 1.41219 1.54696 2.40271 2.69133 2.78419 3.12485 3.23351 3.54685 3.95649 3.98392 4.32948 4.42976 4.52042 4.60241 4.62866 4.75912 4.82316 4.82557 4.85967 4.97675 5.01437 5.04758 5.26518 5.29814 5.43967 5.65515 5.77522 6.12445 6.25954 6.52641 6.84359 7.36658 8.91549 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.092234 B = 0.005158 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.503211 B = 5427.255739 C = 5565.934806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.083 3.917 11 N -0.697 5.697 12 C 0.095 3.905 13 C -0.108 4.108 14 H 0.104 0.896 15 C -0.121 4.121 16 C -0.245 4.245 17 C -0.131 4.131 18 C -0.123 4.123 19 H 0.264 0.736 20 H -0.006 1.006 21 H -0.007 1.007 22 H 0.019 0.981 23 H 0.057 0.943 24 H 0.341 0.659 25 H 0.064 0.936 26 H 0.030 0.970 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.954 -16.974 0.846 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.046 4.046 11 N -0.328 5.328 12 C -0.034 4.034 13 C -0.126 4.126 14 H 0.122 0.878 15 C -0.157 4.157 16 C -0.246 4.246 17 C -0.167 4.167 18 C -0.159 4.159 19 H 0.073 0.927 20 H 0.013 0.987 21 H 0.011 0.989 22 H 0.038 0.962 23 H 0.075 0.925 24 H 0.158 0.842 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.740 -16.876 0.159 17.827 hybrid contribution 0.339 1.084 0.844 1.415 sum 6.079 -15.792 1.003 16.951 Atomic orbital electron populations 1.70118 1.07869 1.27805 1.51417 1.25992 0.95782 1.03439 0.94525 0.85342 0.78995 0.78480 0.77862 1.18568 1.20281 1.20211 1.21643 0.93555 0.92240 1.50989 0.92140 1.18937 0.94321 0.92291 0.95150 1.21787 0.95659 0.88397 0.98716 1.60484 1.20422 1.01745 1.50135 1.21425 0.93541 0.88449 0.99960 1.21981 0.99502 0.88487 1.02667 0.87799 1.22890 1.01887 1.01083 0.89877 1.21663 1.03024 0.98274 1.01629 1.22733 0.89566 1.02024 1.02397 1.22766 1.00072 0.94434 0.98673 0.92685 0.98719 0.98872 0.96246 0.92493 0.84176 0.91743 0.95173 0.88485 0.87481 0.88749 0.87475 0.87178 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.55 -31.84 9.11 25.60 0.23 -31.61 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.67 5.23 29.85 0.16 1.83 16 10 C 0.08 3.66 5.62 86.30 0.49 4.14 16 11 N -0.70 -26.07 6.50 -513.88 -3.34 -29.41 16 12 C 0.10 2.89 5.97 86.30 0.51 3.41 16 13 C -0.11 -2.79 5.95 -10.79 -0.06 -2.86 16 14 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 15 C -0.12 -2.57 10.18 30.59 0.31 -2.25 16 16 C -0.25 -5.35 5.39 -52.19 -0.28 -5.63 16 17 C -0.13 -2.38 10.53 30.59 0.32 -2.06 16 18 C -0.12 -2.13 10.53 30.59 0.32 -1.81 16 19 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 20 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 21 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 22 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.34 12.29 8.73 -89.69 -0.78 11.51 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.03 0.89 7.88 -2.39 -0.02 0.87 16 27 H 0.10 1.98 8.03 -2.39 -0.02 1.96 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -64.36 274.87 1.72 -62.63 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.29 Total: 13.76 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 2.46 Total: -36.34 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -3.06 Total: -86.80 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.36 1.72 -62.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700162402.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.656 kcal (2) G-P(sol) polarization free energy of solvation -64.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds