Wall clock time and date at job start Mon Mar 30 2020 02:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47153 * 2 1 4 4 C 1.52999 * 109.46886 * 239.99997 * 2 1 3 5 5 C 1.50694 * 109.47211 * 65.00326 * 4 2 1 6 6 H 1.08002 * 119.99922 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00097 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00283 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00167 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47164 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47081 * 120.00086 * 9 7 5 12 12 H 1.48503 * 109.47272 * 240.00191 * 9 7 5 13 13 N 1.46501 * 109.47089 * 120.00199 * 2 1 3 14 14 C 1.37669 * 126.49573 * 59.97452 * 13 2 1 15 15 C 1.34371 * 106.94522 * 180.02562 * 14 13 2 16 16 N 1.34394 * 108.32192 * 359.97438 * 15 14 13 17 17 C 1.31195 * 109.30280 * 0.02562 * 16 15 14 18 18 N 1.38493 * 125.79078 * 179.97438 * 17 16 15 19 19 H 1.08997 * 109.47335 * 299.99886 * 1 2 3 20 20 H 1.08998 * 109.47320 * 60.00022 * 1 2 3 21 21 H 1.09003 * 109.47236 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46849 * 185.00408 * 4 2 1 23 23 H 1.08996 * 109.47464 * 304.99583 * 4 2 1 24 24 H 0.97004 * 120.00617 * 180.02562 * 8 7 5 25 25 H 1.07999 * 126.52616 * 0.02562 * 14 13 2 26 26 H 1.08001 * 125.83888 * 180.26665 * 15 14 13 27 27 H 0.97000 * 120.00228 * 0.02853 * 18 17 16 28 28 H 0.97001 * 120.00016 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0800 0.9742 -2.3756 7 6 1.9932 -0.4017 -3.7282 8 7 2.6763 -1.5188 -3.8511 9 14 1.4985 0.5627 -5.2496 10 1 0.7402 1.7732 -4.8435 11 1 2.7164 0.9683 -5.9963 12 1 0.6451 -0.2870 -6.1185 13 7 2.0183 -0.6907 1.1962 14 6 1.7692 -1.9988 1.5454 15 6 2.4029 -2.2209 2.7093 16 7 3.0274 -1.0879 3.0733 17 6 2.8038 -0.1608 2.1723 18 7 3.2855 1.1371 2.2089 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 3.1263 -0.7995 -1.2055 23 1 1.6054 -1.7198 -1.2952 24 1 2.9242 -1.8414 -4.7317 25 1 1.1770 -2.7108 0.9898 26 1 2.4130 -3.1522 3.2561 27 1 3.8416 1.4274 2.9487 28 1 3.0667 1.7560 1.4947 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702556979.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:31 Heat of formation + Delta-G solvation = 52.313309 kcal Electronic energy + Delta-G solvation = -12182.946112 eV Core-core repulsion = 10041.636327 eV Total energy + Delta-G solvation = -2141.309785 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.25172 -35.52267 -33.85648 -32.64827 -29.94447 -27.40928 -27.14260 -23.92872 -21.73838 -20.45011 -19.24609 -17.19599 -16.19394 -15.89795 -14.93285 -14.59658 -14.35057 -13.49904 -12.96575 -12.91772 -12.51345 -12.02906 -11.58272 -11.07936 -10.99188 -10.67278 -10.33820 -10.18356 -9.91485 -9.47365 -9.20732 -8.72068 -8.52976 -6.97741 -6.16802 -4.22148 2.88704 3.20974 3.23821 3.29974 3.32513 3.84249 4.18287 4.34179 5.18969 5.36872 5.50290 5.76889 5.93273 5.95097 6.17348 6.37818 6.54954 6.65533 6.86498 7.13566 7.33274 7.44213 7.51534 7.77217 7.85992 8.10605 8.24476 8.83032 8.88202 9.43092 10.94270 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.055677 B = 0.009120 C = 0.008850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.776510 B = 3069.572775 C = 3163.206914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.133 3.867 3 H 0.080 0.920 4 C 0.022 3.978 5 C -0.526 4.526 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.468 5.468 14 C -0.058 4.058 15 C -0.027 4.027 16 N -0.554 5.554 17 C 0.466 3.534 18 N -0.845 5.845 19 H 0.039 0.961 20 H 0.082 0.918 21 H 0.057 0.943 22 H 0.021 0.979 23 H 0.026 0.974 24 H 0.263 0.737 25 H 0.166 0.834 26 H 0.161 0.839 27 H 0.413 0.587 28 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 3.326 7.387 8.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.098 0.902 4 C -0.016 4.016 5 C -0.564 4.564 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.527 5.527 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.158 5.158 14 C -0.191 4.191 15 C -0.173 4.173 16 N -0.283 5.283 17 C 0.111 3.889 18 N -0.402 5.402 19 H 0.058 0.942 20 H 0.101 0.899 21 H 0.076 0.924 22 H 0.040 0.960 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.183 0.817 26 H 0.179 0.821 27 H 0.244 0.756 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.975 3.248 7.821 8.696 hybrid contribution -0.534 0.629 -1.770 1.953 sum -2.509 3.876 6.051 7.612 Atomic orbital electron populations 1.22017 0.94316 1.02438 1.01526 1.21767 0.94882 0.96255 0.83998 0.90182 1.19414 0.96940 0.96109 0.89115 1.21068 1.36104 1.08746 0.90512 0.92168 1.25007 0.94861 0.95017 0.99263 1.69978 1.37995 1.20916 1.23790 0.86483 0.78372 0.79996 0.82852 1.19625 1.20891 1.20861 1.45853 1.39983 1.10752 1.19206 1.22271 1.09795 0.86556 1.00469 1.21810 1.01798 0.97025 0.96668 1.70356 1.29759 1.00325 1.27845 1.19488 0.93957 0.88252 0.87214 1.40781 1.61365 1.07480 1.30537 0.94169 0.89932 0.92411 0.96022 0.95597 0.92747 0.81700 0.82130 0.75632 0.76652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.06 37.16 0.34 -2.23 15 2 C 0.13 2.61 3.01 -67.93 -0.20 2.41 15 3 H 0.08 1.49 6.83 -51.93 -0.35 1.13 15 4 C 0.02 0.54 4.46 -27.89 -0.12 0.41 15 5 C -0.53 -13.76 8.41 -34.45 -0.29 -14.05 15 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 15 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 8 N -0.89 -25.79 13.29 55.43 0.74 -25.06 15 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 15 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 13 N -0.47 -9.03 2.65 -110.40 -0.29 -9.33 15 14 C -0.06 -1.09 10.75 -16.29 -0.18 -1.26 15 15 C -0.03 -0.49 11.84 -17.79 -0.21 -0.70 15 16 N -0.55 -10.86 11.29 -13.92 -0.16 -11.01 15 17 C 0.47 8.73 9.04 -319.61 -2.89 5.84 15 18 N -0.85 -12.29 9.07 30.21 0.27 -12.01 15 19 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 20 H 0.08 1.48 6.95 -51.93 -0.36 1.12 15 21 H 0.06 1.02 7.96 -51.93 -0.41 0.60 15 22 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 23 H 0.03 0.68 8.09 -51.93 -0.42 0.26 15 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 25 H 0.17 2.78 8.06 -52.49 -0.42 2.36 15 26 H 0.16 2.38 8.06 -52.49 -0.42 1.96 15 27 H 0.41 5.02 8.95 -40.82 -0.37 4.66 15 28 H 0.40 5.25 7.66 -40.82 -0.31 4.93 15 LS Contribution 243.39 15.07 3.67 3.67 Total: -1.00 -30.75 243.39 -7.87 -38.62 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -3.42 Total: 7.56 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -3.65 Total: -8.01 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.56 Total: -57.41 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.75 -7.87 -38.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702556979.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.932 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds