Wall clock time and date at job start Mon Mar 30 2020 02:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47153 * 2 1 4 4 C 1.52999 * 109.46886 * 239.99997 * 2 1 3 5 5 C 1.50694 * 109.47211 * 65.00326 * 4 2 1 6 6 H 1.08002 * 119.99922 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00097 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00283 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00167 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47164 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47081 * 120.00086 * 9 7 5 12 12 H 1.48503 * 109.47272 * 240.00191 * 9 7 5 13 13 N 1.46501 * 109.47089 * 120.00199 * 2 1 3 14 14 C 1.37669 * 126.49573 * 59.97452 * 13 2 1 15 15 C 1.34371 * 106.94522 * 180.02562 * 14 13 2 16 16 N 1.34394 * 108.32192 * 359.97438 * 15 14 13 17 17 C 1.31195 * 109.30280 * 0.02562 * 16 15 14 18 18 N 1.38493 * 125.79078 * 179.97438 * 17 16 15 19 19 H 1.08997 * 109.47335 * 299.99886 * 1 2 3 20 20 H 1.08998 * 109.47320 * 60.00022 * 1 2 3 21 21 H 1.09003 * 109.47236 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46849 * 185.00408 * 4 2 1 23 23 H 1.08996 * 109.47464 * 304.99583 * 4 2 1 24 24 H 0.97004 * 120.00617 * 180.02562 * 8 7 5 25 25 H 1.07999 * 126.52616 * 0.02562 * 14 13 2 26 26 H 1.08001 * 125.83888 * 180.26665 * 15 14 13 27 27 H 0.97000 * 120.00228 * 0.02853 * 18 17 16 28 28 H 0.97001 * 120.00016 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0800 0.9742 -2.3756 7 6 1.9932 -0.4017 -3.7282 8 7 2.6763 -1.5188 -3.8511 9 14 1.4985 0.5627 -5.2496 10 1 0.7402 1.7732 -4.8435 11 1 2.7164 0.9683 -5.9963 12 1 0.6451 -0.2870 -6.1185 13 7 2.0183 -0.6907 1.1962 14 6 1.7692 -1.9988 1.5454 15 6 2.4029 -2.2209 2.7093 16 7 3.0274 -1.0879 3.0733 17 6 2.8038 -0.1608 2.1723 18 7 3.2855 1.1371 2.2089 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 3.1263 -0.7995 -1.2055 23 1 1.6054 -1.7198 -1.2952 24 1 2.9242 -1.8414 -4.7317 25 1 1.1770 -2.7108 0.9898 26 1 2.4130 -3.1522 3.2561 27 1 3.8416 1.4274 2.9487 28 1 3.0667 1.7560 1.4947 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702556979.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:30 Heat of formation + Delta-G solvation = 34.308143 kcal Electronic energy + Delta-G solvation = -12183.726875 eV Core-core repulsion = 10041.636327 eV Total energy + Delta-G solvation = -2142.090548 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.69342 -37.19763 -35.13872 -34.59896 -31.57616 -28.98007 -28.75880 -25.76687 -23.35548 -21.91549 -20.73772 -18.88938 -17.96900 -17.19108 -16.69532 -16.10262 -15.92622 -15.10839 -14.52344 -14.34753 -14.26876 -13.74225 -13.17959 -12.86664 -12.76744 -12.36214 -12.08269 -11.77386 -11.40759 -11.38370 -10.77095 -10.62817 -10.27609 -8.35282 -8.23908 -6.36463 1.41400 1.41622 1.44479 1.54971 1.84358 2.39645 2.40886 2.91146 3.11089 3.83099 4.10202 4.23436 4.39731 4.61863 4.75797 4.91785 4.98385 5.22266 5.34979 5.35765 5.57355 5.70630 5.85367 5.96882 6.11334 6.66124 6.76645 6.83795 7.34016 7.52474 8.88329 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.055677 B = 0.009120 C = 0.008850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.776510 B = 3069.572775 C = 3163.206914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.143 3.857 3 H 0.094 0.906 4 C 0.033 3.967 5 C -0.533 4.533 6 H 0.076 0.924 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.967 3.033 10 H -0.254 1.254 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.478 5.478 14 C -0.079 4.079 15 C -0.028 4.028 16 N -0.576 5.576 17 C 0.458 3.542 18 N -0.830 5.830 19 H 0.063 0.937 20 H 0.080 0.920 21 H 0.053 0.947 22 H -0.018 1.018 23 H -0.001 1.001 24 H 0.263 0.737 25 H 0.174 0.826 26 H 0.189 0.811 27 H 0.424 0.576 28 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 4.723 7.582 9.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.005 4.005 5 C -0.571 4.571 6 H 0.094 0.906 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.792 3.208 10 H -0.178 1.178 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.169 5.169 14 C -0.210 4.210 15 C -0.173 4.173 16 N -0.306 5.306 17 C 0.103 3.897 18 N -0.389 5.389 19 H 0.081 0.919 20 H 0.099 0.901 21 H 0.072 0.928 22 H 0.000 1.000 23 H 0.017 0.983 24 H 0.072 0.928 25 H 0.191 0.809 26 H 0.206 0.794 27 H 0.258 0.742 28 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.794 4.671 8.041 9.710 hybrid contribution -0.232 0.168 -1.769 1.792 sum -3.026 4.839 6.272 8.480 Atomic orbital electron populations 1.21927 0.92455 1.02533 1.02517 1.21528 0.96225 0.96030 0.82171 0.88792 1.19194 0.94223 0.95383 0.91661 1.21505 1.35440 1.09105 0.91039 0.90576 1.25972 0.94838 0.95927 1.02890 1.70125 1.39704 1.22956 1.24563 0.85360 0.77968 0.78948 0.78543 1.17752 1.20918 1.20749 1.45838 1.40670 1.11180 1.19197 1.22574 1.10661 0.86730 1.01075 1.22319 1.00744 0.97668 0.96559 1.70387 1.30658 1.01050 1.28541 1.19914 0.93497 0.89407 0.86890 1.40811 1.60786 1.06105 1.31180 0.91852 0.90094 0.92837 1.00007 0.98270 0.92775 0.80899 0.79395 0.74247 0.75663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.06 71.98 0.65 -3.92 15 2 C 0.14 5.47 3.01 44.99 0.14 5.61 15 3 H 0.09 3.32 6.83 -2.39 -0.02 3.30 15 4 C 0.03 1.65 4.46 29.85 0.13 1.79 15 5 C -0.53 -27.64 8.41 25.60 0.22 -27.42 15 6 H 0.08 3.63 7.06 -2.91 -0.02 3.61 15 7 C 0.00 0.11 5.46 84.65 0.46 0.57 15 8 N -0.93 -55.15 13.29 21.45 0.28 -54.87 15 9 Si 0.97 41.75 29.54 68.60 2.03 43.78 15 10 H -0.25 -10.15 7.11 99.48 0.71 -9.44 15 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 12 H -0.28 -12.03 7.11 99.48 0.71 -11.33 15 13 N -0.48 -18.05 2.65 -503.20 -1.33 -19.38 15 14 C -0.08 -2.89 10.75 82.89 0.89 -2.00 15 15 C -0.03 -0.97 11.84 83.42 0.99 0.02 15 16 N -0.58 -21.87 11.29 -197.94 -2.23 -24.11 15 17 C 0.46 16.57 9.04 260.37 2.35 18.93 15 18 N -0.83 -22.60 9.07 -58.34 -0.53 -23.13 15 19 H 0.06 1.83 8.14 -2.39 -0.02 1.81 15 20 H 0.08 2.73 6.95 -2.39 -0.02 2.71 15 21 H 0.05 1.82 7.96 -2.39 -0.02 1.80 15 22 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 15 23 H 0.00 -0.06 8.09 -2.39 -0.02 -0.08 15 24 H 0.26 14.67 8.31 -92.71 -0.77 13.90 15 25 H 0.17 5.84 8.06 -2.91 -0.02 5.81 15 26 H 0.19 5.25 8.06 -2.91 -0.02 5.23 15 27 H 0.42 9.49 8.95 -92.71 -0.83 8.66 15 28 H 0.41 9.83 7.66 -92.71 -0.71 9.12 15 Total: -1.00 -65.22 243.39 3.68 -61.54 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -0.37 Total: 22.59 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 5.83 Total: -6.43 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -3.81 Total: -121.49 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -65.22 3.68 -61.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702556979.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.847 kcal (2) G-P(sol) polarization free energy of solvation -65.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds