Wall clock time and date at job start Mon Mar 30 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.04821 * 53.51620 * 11 10 9 13 13 C 1.54387 * 110.07293 * 291.97545 * 11 10 9 14 14 C 1.54926 * 104.21967 * 217.19484 * 13 11 10 15 15 C 1.54991 * 102.82026 * 37.72822 * 14 13 11 16 16 C 1.53475 * 110.07285 * 174.99819 * 11 10 9 17 17 C 1.52549 * 121.08911 * 335.18837 * 16 11 10 18 18 C 1.52565 * 121.06004 * 263.46805 * 16 11 10 19 19 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 20 20 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 21 21 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 22 22 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 23 23 H 1.09001 * 110.47953 * 335.88095 * 13 11 10 24 24 H 1.09000 * 110.48325 * 98.51123 * 13 11 10 25 25 H 1.08993 * 110.74675 * 279.39048 * 14 13 11 26 26 H 1.09005 * 110.89363 * 156.12837 * 14 13 11 27 27 H 1.08991 * 110.51272 * 203.78641 * 15 14 13 28 28 H 1.08999 * 110.62995 * 81.12488 * 15 14 13 29 29 H 1.09004 * 117.50198 * 357.01871 * 17 16 11 30 30 H 1.08990 * 117.51528 * 142.10513 * 17 16 11 31 31 H 1.08999 * 117.51418 * 217.93654 * 18 16 11 32 32 H 1.08996 * 117.50874 * 2.98735 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3581 -4.7083 -0.8219 13 6 0.3078 -4.8696 1.3462 14 6 0.1480 -6.3829 1.6371 15 6 1.4914 -6.9728 1.1375 16 6 1.8133 -6.1532 -0.1245 17 6 3.1932 -6.2235 -0.7711 18 6 1.9817 -6.8370 -1.4779 19 1 -0.4850 0.8401 0.0004 20 1 0.3557 -2.3880 0.0005 21 1 2.6849 -3.7145 -0.8894 22 1 2.6848 -3.7144 0.8905 23 1 0.8931 -4.3901 2.1308 24 1 -0.6685 -4.3940 1.2527 25 1 -0.6886 -6.7978 1.0751 26 1 0.0209 -6.5623 2.7047 27 1 1.3763 -8.0277 0.8887 28 1 2.2712 -6.8411 1.8876 29 1 3.6033 -5.3017 -1.1838 30 1 3.9202 -6.9074 -0.3332 31 1 1.9118 -7.9244 -1.5048 32 1 1.5944 -6.3191 -2.3553 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706219898.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:59 Heat of formation + Delta-G solvation = 17.965078 kcal Electronic energy + Delta-G solvation = -12401.971917 eV Core-core repulsion = 10362.713024 eV Total energy + Delta-G solvation = -2039.258893 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.18510 -34.63947 -33.61482 -31.31415 -28.44858 -25.72222 -23.96907 -22.52447 -21.66841 -20.09640 -18.21679 -16.85293 -15.47494 -14.90882 -14.45980 -14.30566 -13.42017 -13.14497 -12.91814 -12.34670 -12.17282 -11.39765 -11.27273 -10.98449 -10.78060 -10.71667 -10.43612 -10.26272 -10.19259 -9.97624 -9.90601 -9.62194 -9.22959 -8.79357 -6.83960 -5.70602 -2.98414 3.47476 3.51359 3.52745 4.00632 4.62499 4.71640 4.92296 5.11722 5.13778 5.46621 5.51498 5.61293 5.75748 5.82615 5.85716 6.01695 6.05429 6.08742 6.19384 6.21382 6.36102 6.39088 6.42669 6.50733 6.64900 6.74827 6.92959 7.06534 7.74767 8.48975 9.59566 10.19685 10.54642 11.52463 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.055035 B = 0.008435 C = 0.007773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.647174 B = 3318.787809 C = 3601.464601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.237 4.237 8 H 0.068 0.932 9 N -0.733 5.733 10 C 0.162 3.838 11 C -0.064 4.064 12 H 0.071 0.929 13 C -0.110 4.110 14 C -0.123 4.123 15 C -0.086 4.086 16 C -0.119 4.119 17 C -0.173 4.173 18 C -0.174 4.174 19 H 0.255 0.745 20 H 0.383 0.617 21 H 0.017 0.983 22 H 0.019 0.981 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.343 -13.721 0.827 13.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.086 0.914 9 N -0.377 5.377 10 C 0.035 3.965 11 C -0.083 4.083 12 H 0.089 0.911 13 C -0.148 4.148 14 C -0.161 4.161 15 C -0.123 4.123 16 C -0.119 4.119 17 C -0.210 4.210 18 C -0.211 4.211 19 H 0.065 0.935 20 H 0.217 0.783 21 H 0.035 0.965 22 H 0.037 0.963 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.470 -13.588 0.829 13.836 hybrid contribution 0.201 0.968 -0.080 0.992 sum 2.672 -12.620 0.749 12.921 Atomic orbital electron populations 1.69655 1.05073 1.25629 1.58031 1.24730 0.95525 0.97619 1.03283 0.86270 0.78505 0.83640 0.77806 1.21697 1.21329 1.21349 1.19202 0.90979 0.84300 1.42335 0.91356 1.42380 1.05880 1.00015 1.89384 1.20743 0.93133 0.85129 0.97528 1.21407 0.96813 0.92175 0.97890 0.91086 1.22340 1.00502 0.94841 0.97106 1.22483 0.96849 0.96645 1.00099 1.21855 0.97517 0.97609 0.95350 1.21742 0.99222 0.97418 0.93533 1.22974 0.90933 1.02945 1.04146 1.22952 1.03078 0.99237 0.95806 0.93550 0.78322 0.96541 0.96348 0.91168 0.91583 0.91881 0.91978 0.92318 0.91451 0.88133 0.89340 0.89384 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.06 55.49 0.72 -28.19 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 4 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -19.33 5.45 -59.91 -0.33 -19.65 16 10 C 0.16 3.46 5.05 -4.04 -0.02 3.44 16 11 C -0.06 -1.13 2.82 -89.65 -0.25 -1.38 16 12 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 13 C -0.11 -1.83 6.11 -24.99 -0.15 -1.99 16 14 C -0.12 -1.63 6.91 -24.66 -0.17 -1.80 16 15 C -0.09 -1.11 6.58 -25.22 -0.17 -1.27 16 16 C -0.12 -1.73 2.26 -154.25 -0.35 -2.08 16 17 C -0.17 -2.37 9.61 -26.92 -0.26 -2.63 16 18 C -0.17 -2.27 10.23 -26.91 -0.28 -2.55 16 19 H 0.25 7.61 8.31 -40.82 -0.34 7.28 16 20 H 0.38 10.56 7.56 -40.82 -0.31 10.26 16 21 H 0.02 0.36 6.44 -51.93 -0.33 0.03 16 22 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 23 H 0.07 1.26 7.76 -51.93 -0.40 0.86 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 1.50 6.40 -51.93 -0.33 1.17 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 260.00 15.07 3.92 3.92 Total: -1.00 -30.47 260.00 -7.74 -38.21 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.14 Total: 5.66 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -1.89 Total: -17.84 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.40 Total: -47.84 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.47 -7.74 -38.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706219898.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.174 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds