Wall clock time and date at job start Mon Mar 30 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.04821 * 53.51620 * 11 10 9 13 13 C 1.54387 * 110.07293 * 291.97545 * 11 10 9 14 14 C 1.54926 * 104.21967 * 217.19484 * 13 11 10 15 15 C 1.54991 * 102.82026 * 37.72822 * 14 13 11 16 16 C 1.53475 * 110.07285 * 174.99819 * 11 10 9 17 17 C 1.52549 * 121.08911 * 335.18837 * 16 11 10 18 18 C 1.52565 * 121.06004 * 263.46805 * 16 11 10 19 19 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 20 20 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 21 21 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 22 22 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 23 23 H 1.09001 * 110.47953 * 335.88095 * 13 11 10 24 24 H 1.09000 * 110.48325 * 98.51123 * 13 11 10 25 25 H 1.08993 * 110.74675 * 279.39048 * 14 13 11 26 26 H 1.09005 * 110.89363 * 156.12837 * 14 13 11 27 27 H 1.08991 * 110.51272 * 203.78641 * 15 14 13 28 28 H 1.08999 * 110.62995 * 81.12488 * 15 14 13 29 29 H 1.09004 * 117.50198 * 357.01871 * 17 16 11 30 30 H 1.08990 * 117.51528 * 142.10513 * 17 16 11 31 31 H 1.08999 * 117.51418 * 217.93654 * 18 16 11 32 32 H 1.08996 * 117.50874 * 2.98735 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3581 -4.7083 -0.8219 13 6 0.3078 -4.8696 1.3462 14 6 0.1480 -6.3829 1.6371 15 6 1.4914 -6.9728 1.1375 16 6 1.8133 -6.1532 -0.1245 17 6 3.1932 -6.2235 -0.7711 18 6 1.9817 -6.8370 -1.4779 19 1 -0.4850 0.8401 0.0004 20 1 0.3557 -2.3880 0.0005 21 1 2.6849 -3.7145 -0.8894 22 1 2.6848 -3.7144 0.8905 23 1 0.8931 -4.3901 2.1308 24 1 -0.6685 -4.3940 1.2527 25 1 -0.6886 -6.7978 1.0751 26 1 0.0209 -6.5623 2.7047 27 1 1.3763 -8.0277 0.8887 28 1 2.2712 -6.8411 1.8876 29 1 3.6033 -5.3017 -1.1838 30 1 3.9202 -6.9074 -0.3332 31 1 1.9118 -7.9244 -1.5048 32 1 1.5944 -6.3191 -2.3553 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706219898.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:59 Heat of formation + Delta-G solvation = -0.041904 kcal Electronic energy + Delta-G solvation = -12402.752758 eV Core-core repulsion = 10362.713024 eV Total energy + Delta-G solvation = -2040.039734 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.41462 -36.49502 -34.92437 -33.28699 -30.13654 -27.06409 -25.80945 -23.99127 -23.00334 -21.36124 -19.78091 -18.71784 -16.95866 -16.27690 -16.09832 -15.77430 -15.00884 -14.88023 -14.69540 -13.61037 -13.41994 -13.06645 -12.95315 -12.71579 -12.29868 -12.22813 -11.93678 -11.85512 -11.62552 -11.48128 -11.39816 -11.04289 -10.91723 -10.42529 -9.01425 -7.96699 -5.26056 1.44802 1.48662 1.54954 2.54228 2.90472 3.35783 3.52792 3.74220 3.93006 3.99359 4.28368 4.31717 4.36640 4.50467 4.62477 4.71625 4.83167 4.90645 4.98631 5.01670 5.06765 5.18529 5.21620 5.29371 5.34022 5.39560 5.44645 5.47435 5.54864 6.25529 7.31137 8.07507 8.32142 9.26789 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.055035 B = 0.008435 C = 0.007773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.647174 B = 3318.787809 C = 3601.464601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.977 3.023 4 H -0.292 1.292 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.073 0.927 9 N -0.745 5.745 10 C 0.165 3.835 11 C -0.060 4.060 12 H 0.055 0.945 13 C -0.112 4.112 14 C -0.114 4.114 15 C -0.079 4.079 16 C -0.132 4.132 17 C -0.175 4.175 18 C -0.160 4.160 19 H 0.252 0.748 20 H 0.373 0.627 21 H 0.015 0.985 22 H 0.014 0.986 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.226 -15.196 0.985 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.218 1.218 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.091 0.909 9 N -0.387 5.387 10 C 0.038 3.962 11 C -0.079 4.079 12 H 0.074 0.926 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.116 4.116 16 C -0.133 4.133 17 C -0.212 4.212 18 C -0.197 4.197 19 H 0.061 0.939 20 H 0.205 0.795 21 H 0.033 0.967 22 H 0.032 0.968 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.384 -15.094 0.986 15.500 hybrid contribution -0.058 1.413 -0.150 1.422 sum 3.326 -13.681 0.836 14.104 Atomic orbital electron populations 1.69822 1.06633 1.26224 1.59342 1.25612 0.96479 1.01201 1.03540 0.85171 0.77216 0.78920 0.78219 1.21819 1.20318 1.20364 1.19611 0.91436 0.85524 1.41602 0.90936 1.42592 1.05612 1.01213 1.89330 1.20852 0.93724 0.84714 0.96867 1.21309 0.96038 0.92611 0.97938 0.92608 1.22294 0.99100 0.97661 0.95969 1.22455 0.97792 0.93443 1.01453 1.21852 0.96966 0.98609 0.94207 1.21740 0.99797 0.96167 0.95599 1.23011 0.91178 1.02810 1.04165 1.23032 1.01659 1.00620 0.94344 0.93910 0.79495 0.96740 0.96794 0.93039 0.93139 0.90831 0.90301 0.89679 0.91177 0.90057 0.87094 0.86598 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 4 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.25 -14.68 9.99 84.03 0.84 -13.84 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -40.37 5.45 -343.47 -1.87 -42.24 16 10 C 0.16 7.17 5.05 86.38 0.44 7.60 16 11 C -0.06 -2.13 2.82 -10.16 -0.03 -2.16 16 12 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 13 C -0.11 -3.76 6.11 31.72 0.19 -3.56 16 14 C -0.11 -2.77 6.91 31.93 0.22 -2.55 16 15 C -0.08 -1.78 6.58 31.57 0.21 -1.58 16 16 C -0.13 -3.63 2.26 -52.02 -0.12 -3.74 16 17 C -0.17 -4.45 9.61 30.47 0.29 -4.16 16 18 C -0.16 -3.76 10.23 30.48 0.31 -3.45 16 19 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 20 H 0.37 21.37 7.56 -92.71 -0.70 20.67 16 21 H 0.01 0.65 6.44 -2.39 -0.02 0.63 16 22 H 0.01 0.63 8.00 -2.39 -0.02 0.61 16 23 H 0.05 1.88 7.76 -2.39 -0.02 1.86 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.08 1.52 8.11 -2.39 -0.02 1.50 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 2.38 6.40 -2.38 -0.02 2.36 16 30 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -65.24 260.00 3.64 -61.60 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.38 Total: 23.57 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 2.82 Total: -31.50 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -1.59 Total: -103.06 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -65.24 3.64 -61.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706219898.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.553 kcal (2) G-P(sol) polarization free energy of solvation -65.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds