Wall clock time and date at job start Mon Mar 30 2020 03:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99791 * 2 1 4 4 H 1.48493 * 109.47170 * 270.00157 * 3 2 1 5 5 H 1.48498 * 109.47185 * 30.00539 * 3 2 1 6 6 H 1.48507 * 109.46525 * 150.00293 * 3 2 1 7 7 C 1.38809 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00447 * 359.97438 * 7 2 1 9 9 N 1.36943 * 120.00074 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00133 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47072 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47173 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.63893 * 304.58353 * 12 11 10 14 14 C 1.53015 * 109.64241 * 65.00088 * 12 11 10 15 15 C 1.50065 * 110.14833 * 169.12188 * 14 12 11 16 16 C 1.29444 * 124.07585 * 342.87120 * 15 14 12 17 17 C 1.50076 * 124.07409 * 0.46662 * 16 15 14 18 18 C 1.53019 * 110.14618 * 342.87111 * 17 16 15 19 19 H 0.96997 * 120.00362 * 359.97438 * 1 2 3 20 20 H 0.96999 * 119.99828 * 359.97438 * 9 7 2 21 21 H 1.09000 * 109.47059 * 59.99948 * 10 9 7 22 22 H 1.09001 * 109.47245 * 300.00411 * 10 9 7 23 23 H 1.09000 * 109.46898 * 60.00245 * 11 10 9 24 24 H 1.08995 * 109.47090 * 300.00480 * 11 10 9 25 25 H 1.08999 * 109.35672 * 48.91500 * 14 12 11 26 26 H 1.09001 * 109.36220 * 289.32622 * 14 12 11 27 27 H 1.08004 * 117.96434 * 162.85069 * 15 14 12 28 28 H 1.08002 * 117.96460 * 180.19240 * 16 15 14 29 29 H 1.08998 * 109.35107 * 103.07595 * 17 16 15 30 30 H 1.09002 * 109.35548 * 222.66187 * 17 16 15 31 31 H 1.09006 * 109.64636 * 289.75252 * 18 17 16 32 32 H 1.09001 * 109.81634 * 169.22154 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0024 12 6 6.3814 -3.5163 -0.0030 13 1 6.0607 -4.1249 0.8425 14 6 6.1101 -4.2663 -1.3089 15 6 7.0491 -5.4293 -1.4417 16 6 8.1396 -5.5629 -0.7572 17 6 8.6121 -4.5783 0.2722 18 6 7.8875 -3.2422 0.0952 19 1 -0.4850 0.8400 0.0004 20 1 3.8647 -0.3621 -0.0014 21 1 3.8485 -3.0426 -0.8908 22 1 3.8492 -3.0423 0.8891 23 1 5.8804 -1.6193 0.8872 24 1 5.8790 -1.6201 -0.8927 25 1 6.2526 -3.5889 -2.1508 26 1 5.0825 -4.6298 -1.3100 27 1 6.7994 -6.2032 -2.1525 28 1 8.7449 -6.4395 -0.9349 29 1 8.4077 -4.9711 1.2682 30 1 9.6854 -4.4250 0.1596 31 1 8.2318 -2.7567 -0.8180 32 1 8.0875 -2.5972 0.9509 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706884239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:33 Heat of formation + Delta-G solvation = 3.345902 kcal Electronic energy + Delta-G solvation = -12053.718754 eV Core-core repulsion = 10013.825926 eV Total energy + Delta-G solvation = -2039.892828 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.79332 -35.24831 -32.76645 -30.99592 -30.65794 -27.55654 -24.06904 -22.92150 -21.27425 -20.46778 -17.87670 -17.45894 -16.00441 -14.61952 -14.38395 -14.12545 -14.02739 -13.29679 -12.98391 -12.75502 -12.31577 -12.29735 -12.04151 -11.31153 -11.12854 -11.02728 -10.73549 -10.41980 -10.15387 -9.98285 -9.89226 -9.54214 -8.97530 -8.83228 -7.17109 -5.72813 -3.07577 2.29886 3.40512 3.43566 3.47826 4.63071 4.69635 4.78779 4.88032 5.25612 5.31267 5.36263 5.53095 5.57336 5.62172 5.72211 5.80588 5.87074 5.97060 6.02338 6.08513 6.22359 6.28253 6.33273 6.50850 6.66871 6.84330 6.89450 6.96945 8.04729 8.46778 9.26559 9.99219 10.19772 11.45903 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.071565 B = 0.006929 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.156457 B = 4039.978206 C = 4284.767330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.759 5.759 10 C 0.156 3.844 11 C -0.125 4.125 12 C -0.082 4.082 13 H 0.072 0.928 14 C -0.091 4.091 15 C -0.147 4.147 16 C -0.167 4.167 17 C -0.089 4.089 18 C -0.115 4.115 19 H 0.259 0.741 20 H 0.360 0.640 21 H 0.028 0.972 22 H 0.024 0.976 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.262 -8.267 -0.914 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.404 5.404 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.101 4.101 13 H 0.091 0.909 14 C -0.127 4.127 15 C -0.165 4.165 16 C -0.185 4.185 17 C -0.126 4.126 18 C -0.153 4.153 19 H 0.069 0.931 20 H 0.192 0.808 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.022 -8.358 -0.915 18.985 hybrid contribution 0.513 1.109 -0.058 1.224 sum 17.535 -7.249 -0.973 18.999 Atomic orbital electron populations 1.69707 1.05102 1.25764 1.57900 1.24679 0.95256 0.97218 1.02195 0.86521 0.79207 0.84921 0.77759 1.21099 1.21743 1.20341 1.19098 0.80778 0.94738 1.42635 0.89273 1.42754 1.04044 1.02433 1.91164 1.20678 0.88862 0.89107 0.98474 1.21836 0.96252 0.96364 1.01843 1.21143 0.94445 0.96630 0.97897 0.90928 1.20594 0.98844 0.95349 0.97959 1.22163 0.95985 0.98852 0.99504 1.22005 0.97807 0.99739 0.98951 1.20428 0.99534 0.94605 0.98045 1.21666 0.95227 0.96499 1.01913 0.93115 0.80764 0.95422 0.95814 0.92048 0.92088 0.90751 0.90397 0.88291 0.88496 0.91139 0.91561 0.91928 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.08 13.97 55.49 0.78 -29.30 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 3 Si 0.89 22.64 27.74 -169.99 -4.71 17.92 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 7 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 N -0.76 -18.85 5.41 -59.91 -0.32 -19.17 16 10 C 0.16 3.12 6.03 -4.04 -0.02 3.09 16 11 C -0.13 -1.97 4.80 -26.73 -0.13 -2.10 16 12 C -0.08 -1.07 2.24 -90.41 -0.20 -1.28 16 13 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 14 C -0.09 -1.15 4.91 -28.18 -0.14 -1.29 16 15 C -0.15 -1.67 9.80 -35.90 -0.35 -2.02 16 16 C -0.17 -1.76 9.80 -35.90 -0.35 -2.12 16 17 C -0.09 -0.89 6.12 -28.17 -0.17 -1.07 16 18 C -0.12 -1.30 5.31 -26.52 -0.14 -1.44 16 19 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 20 H 0.36 8.68 5.53 -40.82 -0.23 8.46 16 21 H 0.03 0.56 6.83 -51.93 -0.35 0.20 16 22 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 25 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 26 H 0.08 1.04 7.13 -51.93 -0.37 0.67 16 27 H 0.10 1.01 8.06 -52.48 -0.42 0.58 16 28 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 257.95 15.07 3.89 3.89 Total: -1.00 -31.58 257.95 -7.33 -38.91 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.19 Total: 3.28 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -1.76 Total: -15.52 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.45 Total: -48.47 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.71 Total: 17.92 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.58 -7.33 -38.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706884239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.253 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds