Wall clock time and date at job start Mon Mar 30 2020 03:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99791 * 2 1 4 4 H 1.48493 * 109.47170 * 270.00157 * 3 2 1 5 5 H 1.48498 * 109.47185 * 30.00539 * 3 2 1 6 6 H 1.48507 * 109.46525 * 150.00293 * 3 2 1 7 7 C 1.38809 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00447 * 359.97438 * 7 2 1 9 9 N 1.36943 * 120.00074 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00133 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47072 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47173 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.63893 * 304.58353 * 12 11 10 14 14 C 1.53015 * 109.64241 * 65.00088 * 12 11 10 15 15 C 1.50065 * 110.14833 * 169.12188 * 14 12 11 16 16 C 1.29444 * 124.07585 * 342.87120 * 15 14 12 17 17 C 1.50076 * 124.07409 * 0.46662 * 16 15 14 18 18 C 1.53019 * 110.14618 * 342.87111 * 17 16 15 19 19 H 0.96997 * 120.00362 * 359.97438 * 1 2 3 20 20 H 0.96999 * 119.99828 * 359.97438 * 9 7 2 21 21 H 1.09000 * 109.47059 * 59.99948 * 10 9 7 22 22 H 1.09001 * 109.47245 * 300.00411 * 10 9 7 23 23 H 1.09000 * 109.46898 * 60.00245 * 11 10 9 24 24 H 1.08995 * 109.47090 * 300.00480 * 11 10 9 25 25 H 1.08999 * 109.35672 * 48.91500 * 14 12 11 26 26 H 1.09001 * 109.36220 * 289.32622 * 14 12 11 27 27 H 1.08004 * 117.96434 * 162.85069 * 15 14 12 28 28 H 1.08002 * 117.96460 * 180.19240 * 16 15 14 29 29 H 1.08998 * 109.35107 * 103.07595 * 17 16 15 30 30 H 1.09002 * 109.35548 * 222.66187 * 17 16 15 31 31 H 1.09006 * 109.64636 * 289.75252 * 18 17 16 32 32 H 1.09001 * 109.81634 * 169.22154 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0024 12 6 6.3814 -3.5163 -0.0030 13 1 6.0607 -4.1249 0.8425 14 6 6.1101 -4.2663 -1.3089 15 6 7.0491 -5.4293 -1.4417 16 6 8.1396 -5.5629 -0.7572 17 6 8.6121 -4.5783 0.2722 18 6 7.8875 -3.2422 0.0952 19 1 -0.4850 0.8400 0.0004 20 1 3.8647 -0.3621 -0.0014 21 1 3.8485 -3.0426 -0.8908 22 1 3.8492 -3.0423 0.8891 23 1 5.8804 -1.6193 0.8872 24 1 5.8790 -1.6201 -0.8927 25 1 6.2526 -3.5889 -2.1508 26 1 5.0825 -4.6298 -1.3100 27 1 6.7994 -6.2032 -2.1525 28 1 8.7449 -6.4395 -0.9349 29 1 8.4077 -4.9711 1.2682 30 1 9.6854 -4.4250 0.1596 31 1 8.2318 -2.7567 -0.8180 32 1 8.0875 -2.5972 0.9509 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706884239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:32 Heat of formation + Delta-G solvation = -15.968121 kcal Electronic energy + Delta-G solvation = -12054.556273 eV Core-core repulsion = 10013.825926 eV Total energy + Delta-G solvation = -2040.730347 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.78410 -36.99458 -34.42132 -32.76574 -31.62490 -29.04541 -25.61861 -24.21443 -22.80954 -21.70787 -19.61432 -18.76992 -17.01817 -16.46116 -15.85843 -15.70302 -15.09393 -14.80935 -14.45259 -14.02809 -13.80816 -13.39574 -13.15247 -12.88593 -12.66108 -12.61074 -12.12127 -12.05662 -11.83810 -11.48362 -11.10238 -10.96862 -10.90014 -9.81423 -9.30962 -8.04695 -5.38730 1.36934 1.41195 1.46702 1.48811 2.47588 3.26458 3.54445 3.82421 3.91394 3.99556 4.30353 4.45393 4.50530 4.55558 4.59187 4.70428 4.78544 4.85608 5.00458 5.07729 5.13283 5.18784 5.27926 5.31671 5.42585 5.57792 5.73339 5.84820 6.12539 6.19811 7.06212 7.82584 8.02853 9.17069 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.071565 B = 0.006929 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.156457 B = 4039.978206 C = 4284.767330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.251 1.251 7 C -0.241 4.241 8 H 0.053 0.947 9 N -0.761 5.761 10 C 0.152 3.848 11 C -0.113 4.113 12 C -0.078 4.078 13 H 0.068 0.932 14 C -0.091 4.091 15 C -0.165 4.165 16 C -0.161 4.161 17 C -0.091 4.091 18 C -0.113 4.113 19 H 0.259 0.741 20 H 0.366 0.634 21 H 0.025 0.975 22 H 0.017 0.983 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.082 -7.844 -0.764 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.175 1.175 7 C -0.372 4.372 8 H 0.071 0.929 9 N -0.407 5.407 10 C 0.026 3.974 11 C -0.151 4.151 12 C -0.097 4.097 13 H 0.086 0.914 14 C -0.128 4.128 15 C -0.183 4.183 16 C -0.179 4.179 17 C -0.128 4.128 18 C -0.150 4.150 19 H 0.068 0.932 20 H 0.200 0.800 21 H 0.043 0.957 22 H 0.035 0.965 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.889 -7.968 -0.765 21.440 hybrid contribution -0.397 0.858 -0.102 0.951 sum 19.492 -7.110 -0.867 20.767 Atomic orbital electron populations 1.69896 1.07224 1.26851 1.59568 1.25580 0.96215 1.01516 1.02360 0.85333 0.78636 0.79113 0.78263 1.20191 1.21951 1.17523 1.19080 0.82894 0.93535 1.41727 0.92884 1.42776 1.02521 1.04411 1.91007 1.20858 0.91520 0.87152 0.97859 1.21732 0.92997 0.98052 1.02276 1.21091 0.95706 0.95012 0.97895 0.91355 1.20546 0.98556 0.95983 0.97700 1.22163 0.96412 0.98862 1.00885 1.22260 0.97326 1.00198 0.98082 1.20489 1.00475 0.93633 0.98159 1.21643 0.93448 0.97541 1.02372 0.93221 0.80043 0.95704 0.96484 0.91531 0.91621 0.91091 0.91920 0.87470 0.86731 0.90519 0.89655 0.91794 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.62 13.97 21.65 0.30 -64.32 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.96 46.32 27.74 68.60 1.90 48.22 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.25 -10.89 6.52 99.48 0.65 -10.24 16 7 C -0.24 -14.41 10.47 84.03 0.88 -13.53 16 8 H 0.05 3.47 8.06 -2.91 -0.02 3.44 16 9 N -0.76 -37.32 5.41 -343.45 -1.86 -39.18 16 10 C 0.15 6.03 6.03 86.38 0.52 6.55 16 11 C -0.11 -3.35 4.80 30.59 0.15 -3.20 16 12 C -0.08 -1.91 2.24 -10.66 -0.02 -1.93 16 13 H 0.07 1.73 8.13 -2.38 -0.02 1.71 16 14 C -0.09 -2.22 4.91 29.65 0.15 -2.08 16 15 C -0.17 -3.47 9.80 27.04 0.27 -3.20 16 16 C -0.16 -2.95 9.80 27.04 0.27 -2.68 16 17 C -0.09 -1.52 6.12 29.66 0.18 -1.34 16 18 C -0.11 -2.21 5.31 30.73 0.16 -2.05 16 19 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 20 H 0.37 16.89 5.53 -92.71 -0.51 16.38 16 21 H 0.02 1.01 6.83 -2.39 -0.02 0.99 16 22 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 25 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 26 H 0.06 1.68 7.13 -2.39 -0.02 1.66 16 27 H 0.11 2.03 8.06 -2.91 -0.02 2.00 16 28 H 0.11 1.71 8.06 -2.91 -0.02 1.68 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.25 8.12 -2.38 -0.02 1.23 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -67.74 257.95 3.86 -63.88 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.50 Total: 18.35 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 3.01 Total: -26.95 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -1.55 Total: -103.50 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.22 kcal Total: -67.74 3.86 -63.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706884239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.916 kcal (2) G-P(sol) polarization free energy of solvation -67.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds