Wall clock time and date at job start Mon Mar 30 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 N 1.32233 * 125.15603 * 239.72166 * 4 2 1 6 6 C 1.33072 * 109.79475 * 179.82379 * 5 4 2 7 7 C 1.40375 * 126.31475 * 180.13682 * 6 5 4 8 8 H 1.07997 * 119.99990 * 180.34884 * 7 6 5 9 9 C 1.40270 * 120.00052 * 0.34949 * 7 6 5 10 10 N 1.30651 * 119.99586 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00273 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46764 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47084 * 119.99789 * 11 9 7 14 14 H 1.48490 * 109.47124 * 239.99770 * 11 9 7 15 15 N 1.37017 * 107.36960 * 0.42979 * 6 5 4 16 16 C 1.46499 * 127.01652 * 179.72067 * 15 6 5 17 17 N 1.31395 * 125.15938 * 60.02733 * 4 2 1 18 18 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 0.97005 * 119.99671 * 179.97438 * 10 9 7 26 26 H 1.08996 * 109.47644 * 270.00090 * 16 15 6 27 27 H 1.09000 * 109.47131 * 30.00430 * 16 15 6 28 28 H 1.09004 * 109.47245 * 150.00250 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.8000 -1.7870 -1.2280 6 6 3.0570 -2.1602 -2.4792 7 6 3.8347 -3.2594 -2.8758 8 1 3.9819 -3.4662 -3.9255 9 6 4.4207 -4.0894 -1.9087 10 7 4.2430 -3.8390 -0.6388 11 14 5.4561 -5.5519 -2.4364 12 1 5.5037 -5.6153 -3.9192 13 1 6.8340 -5.4009 -1.9034 14 1 4.8544 -6.8015 -1.9060 15 7 2.4280 -1.2696 -3.3090 16 6 2.4325 -1.2745 -4.7740 17 7 1.7785 -0.3506 -2.4684 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5139 0.8900 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 4.6479 -4.4132 0.0301 26 1 3.2727 -0.6825 -5.1368 27 1 2.5276 -2.2990 -5.1336 28 1 1.5003 -0.8455 -5.1416 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708290588.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:34 Heat of formation + Delta-G solvation = 62.281413 kcal Electronic energy + Delta-G solvation = -12259.952810 eV Core-core repulsion = 10119.075274 eV Total energy + Delta-G solvation = -2140.877536 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.69829 -34.90200 -33.42492 -31.70692 -29.26229 -26.54147 -26.48676 -25.01106 -21.76678 -20.11337 -18.08659 -16.75834 -15.55407 -14.57018 -14.17685 -13.69673 -13.60100 -12.88901 -12.72094 -12.12446 -11.76231 -11.66695 -11.53840 -11.21921 -10.91841 -10.65198 -10.51844 -10.27507 -10.10834 -9.65566 -9.39816 -7.81455 -7.72797 -7.68293 -6.56379 -4.63811 2.95259 3.09342 3.13565 3.50768 3.90090 4.20218 4.57495 5.43615 5.44052 5.61693 5.82799 5.93888 6.13914 6.15720 6.19224 6.24353 6.42426 6.46436 6.51774 6.76521 6.88120 7.05205 7.28427 7.59411 8.04640 8.37500 8.52242 8.78678 9.15126 10.27872 10.41142 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.043229 B = 0.011690 C = 0.009818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.563598 B = 2394.706826 C = 2851.213429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.006 3.994 3 C -0.134 4.134 4 C 0.216 3.784 5 N -0.560 5.560 6 C 0.406 3.594 7 C -0.452 4.452 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.728 5.728 11 Si 0.916 3.084 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.273 1.273 15 N -0.463 5.463 16 C 0.132 3.868 17 N -0.411 5.411 18 H 0.056 0.944 19 H 0.050 0.950 20 H 0.051 0.949 21 H 0.083 0.917 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.275 0.725 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 1.978 -1.137 2.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.015 4.015 3 C -0.192 4.192 4 C -0.067 4.067 5 N -0.294 5.294 6 C 0.157 3.843 7 C -0.493 4.493 8 H 0.103 0.897 9 C -0.144 4.144 10 N -0.351 5.351 11 Si 0.740 3.260 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.198 1.198 15 N -0.257 5.257 16 C -0.013 4.013 17 N -0.245 5.245 18 H 0.075 0.925 19 H 0.069 0.931 20 H 0.070 0.930 21 H 0.101 0.899 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.836 2.407 -0.917 3.163 hybrid contribution 0.650 -0.890 -0.580 1.245 sum -1.186 1.517 -1.496 2.439 Atomic orbital electron populations 1.21729 0.94986 1.01506 1.00999 1.19207 0.94695 0.94327 0.93317 1.21728 1.00962 0.95537 1.00998 1.23615 0.96348 0.94293 0.92468 1.71314 1.23884 1.15201 1.19026 1.21008 0.89903 0.89528 0.83820 1.18408 1.28724 1.07711 0.94503 0.89705 1.25835 0.95770 0.98431 0.94398 1.70012 1.31465 1.32905 1.00763 0.86151 0.79510 0.80435 0.79931 1.18520 1.19808 1.19807 1.50183 1.45674 1.24879 1.04968 1.21152 1.00681 1.01563 0.77900 1.77597 1.27684 1.17947 1.01224 0.92526 0.93065 0.93025 0.89877 0.93071 0.93030 0.92521 0.91362 0.93704 0.91103 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.17 37.16 0.34 -2.06 15 2 C 0.01 0.12 3.39 -91.78 -0.31 -0.19 15 3 C -0.13 -2.41 9.17 37.15 0.34 -2.07 15 4 C 0.22 5.68 6.59 -157.16 -1.04 4.64 15 5 N -0.56 -16.52 9.40 -10.11 -0.10 -16.61 15 6 C 0.41 11.64 7.51 -155.87 -1.17 10.47 15 7 C -0.45 -12.21 9.04 -38.01 -0.34 -12.56 15 8 H 0.08 2.09 7.24 -52.49 -0.38 1.71 15 9 C 0.08 2.11 5.50 -17.29 -0.10 2.02 15 10 N -0.73 -19.87 11.93 55.56 0.66 -19.21 15 11 Si 0.92 18.57 29.56 -169.99 -5.03 13.54 15 12 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 13 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 14 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 15 N -0.46 -12.11 4.12 -67.24 -0.28 -12.38 15 16 C 0.13 2.64 11.33 59.85 0.68 3.32 15 17 N -0.41 -10.86 12.71 32.36 0.41 -10.44 15 18 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 19 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.05 0.97 8.14 -51.93 -0.42 0.54 15 21 H 0.08 1.75 8.14 -51.93 -0.42 1.33 15 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.28 6.75 8.29 -40.82 -0.34 6.41 15 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 27 H 0.07 1.30 7.45 -51.93 -0.39 0.92 15 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 LS Contribution 247.01 15.07 3.72 3.72 Total: -1.00 -32.33 247.01 -5.90 -38.24 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -3.71 Total: -0.42 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.60 Total: 3.57 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.70 Total: -58.65 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.33 -5.90 -38.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708290588.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.517 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds