Wall clock time and date at job start Mon Mar 30 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 N 1.32233 * 125.15603 * 239.72166 * 4 2 1 6 6 C 1.33072 * 109.79475 * 179.82379 * 5 4 2 7 7 C 1.40375 * 126.31475 * 180.13682 * 6 5 4 8 8 H 1.07997 * 119.99990 * 180.34884 * 7 6 5 9 9 C 1.40270 * 120.00052 * 0.34949 * 7 6 5 10 10 N 1.30651 * 119.99586 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00273 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46764 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47084 * 119.99789 * 11 9 7 14 14 H 1.48490 * 109.47124 * 239.99770 * 11 9 7 15 15 N 1.37017 * 107.36960 * 0.42979 * 6 5 4 16 16 C 1.46499 * 127.01652 * 179.72067 * 15 6 5 17 17 N 1.31395 * 125.15938 * 60.02733 * 4 2 1 18 18 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 0.97005 * 119.99671 * 179.97438 * 10 9 7 26 26 H 1.08996 * 109.47644 * 270.00090 * 16 15 6 27 27 H 1.09000 * 109.47131 * 30.00430 * 16 15 6 28 28 H 1.09004 * 109.47245 * 150.00250 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.8000 -1.7870 -1.2280 6 6 3.0570 -2.1602 -2.4792 7 6 3.8347 -3.2594 -2.8758 8 1 3.9819 -3.4662 -3.9255 9 6 4.4207 -4.0894 -1.9087 10 7 4.2430 -3.8390 -0.6388 11 14 5.4561 -5.5519 -2.4364 12 1 5.5037 -5.6153 -3.9192 13 1 6.8340 -5.4009 -1.9034 14 1 4.8544 -6.8015 -1.9060 15 7 2.4280 -1.2696 -3.3090 16 6 2.4325 -1.2745 -4.7740 17 7 1.7785 -0.3506 -2.4684 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5139 0.8900 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 4.6479 -4.4132 0.0301 26 1 3.2727 -0.6825 -5.1368 27 1 2.5276 -2.2990 -5.1336 28 1 1.5003 -0.8455 -5.1416 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708290588.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:34 Heat of formation + Delta-G solvation = 41.386780 kcal Electronic energy + Delta-G solvation = -12260.858869 eV Core-core repulsion = 10119.075274 eV Total energy + Delta-G solvation = -2141.783595 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.68417 -36.58124 -35.35788 -33.52739 -31.27504 -28.41350 -27.98010 -26.86392 -23.48162 -22.10173 -19.93130 -18.74683 -17.41721 -16.33315 -16.05955 -15.33957 -15.26908 -14.65091 -14.25816 -13.78909 -13.47498 -13.38764 -13.00995 -12.80505 -12.70352 -12.26622 -12.05750 -11.94630 -11.77351 -11.55353 -11.26355 -9.80983 -9.76171 -9.74563 -8.48872 -6.69175 1.23218 1.44098 1.61411 1.67098 2.18518 2.40772 2.62818 3.45216 3.76173 4.03643 4.26043 4.36538 4.56571 4.59200 4.69108 4.83550 4.86784 4.97388 4.99333 5.10597 5.24578 5.40810 5.48129 5.65812 6.08719 6.40969 6.53078 6.79869 7.15982 8.29025 8.47910 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.043229 B = 0.011690 C = 0.009818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.563598 B = 2394.706826 C = 2851.213429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.001 4.001 3 C -0.123 4.123 4 C 0.202 3.798 5 N -0.604 5.604 6 C 0.373 3.627 7 C -0.475 4.475 8 H 0.101 0.899 9 C 0.033 3.967 10 N -0.772 5.772 11 Si 1.004 2.996 12 H -0.248 1.248 13 H -0.267 1.267 14 H -0.266 1.266 15 N -0.474 5.474 16 C 0.124 3.876 17 N -0.423 5.423 18 H 0.051 0.949 19 H 0.092 0.908 20 H 0.034 0.966 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.034 0.966 24 H 0.051 0.949 25 H 0.283 0.717 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.361 1.701 -1.562 2.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.022 4.022 3 C -0.181 4.181 4 C -0.081 4.081 5 N -0.339 5.339 6 C 0.124 3.876 7 C -0.516 4.516 8 H 0.119 0.881 9 C -0.189 4.189 10 N -0.396 5.396 11 Si 0.823 3.177 12 H -0.171 1.171 13 H -0.192 1.192 14 H -0.191 1.191 15 N -0.269 5.269 16 C -0.018 4.018 17 N -0.256 5.256 18 H 0.070 0.930 19 H 0.111 0.889 20 H 0.053 0.947 21 H 0.093 0.907 22 H 0.111 0.889 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.676 2.160 -1.372 3.059 hybrid contribution 0.564 -0.759 -0.458 1.050 sum -1.112 1.401 -1.831 2.560 Atomic orbital electron populations 1.21648 0.92622 1.01000 1.02787 1.19473 0.96640 0.95360 0.90708 1.21647 0.99824 0.93813 1.02785 1.24575 0.95626 0.93828 0.94096 1.71258 1.25439 1.16849 1.20354 1.21482 0.90909 0.90656 0.84517 1.18937 1.28999 1.07879 0.95821 0.88057 1.26986 0.96550 1.01389 0.94002 1.70126 1.32555 1.34570 1.02365 0.84850 0.77175 0.75632 0.80071 1.17102 1.19157 1.19103 1.50502 1.45242 1.24306 1.06814 1.21484 1.02370 1.03071 0.74924 1.77478 1.28137 1.18515 1.01497 0.93008 0.88880 0.94673 0.90674 0.88878 0.94710 0.93014 0.90608 0.92141 0.89668 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.23 9.17 71.98 0.66 -3.57 15 2 C 0.00 -0.03 3.39 -11.54 -0.04 -0.07 15 3 C -0.12 -4.24 9.17 71.98 0.66 -3.58 15 4 C 0.20 10.81 6.59 138.74 0.91 11.72 15 5 N -0.60 -36.59 9.40 -185.91 -1.75 -38.34 15 6 C 0.37 21.77 7.51 133.83 1.01 22.78 15 7 C -0.48 -25.77 9.04 23.28 0.21 -25.56 15 8 H 0.10 4.92 7.24 -2.91 -0.02 4.90 15 9 C 0.03 1.71 5.50 85.36 0.47 2.18 15 10 N -0.77 -42.82 11.93 21.88 0.26 -42.56 15 11 Si 1.00 37.43 29.56 68.60 2.03 39.46 15 12 H -0.25 -8.61 7.11 99.48 0.71 -7.91 15 13 H -0.27 -9.62 7.11 99.48 0.71 -8.91 15 14 H -0.27 -9.57 7.11 99.48 0.71 -8.87 15 15 N -0.47 -24.94 4.12 -366.64 -1.51 -26.45 15 16 C 0.12 4.86 11.33 127.77 1.45 6.30 15 17 N -0.42 -22.54 12.71 -51.55 -0.66 -23.19 15 18 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 19 H 0.09 2.42 8.14 -2.39 -0.02 2.40 15 20 H 0.03 1.30 8.14 -2.38 -0.02 1.28 15 21 H 0.07 3.19 8.14 -2.39 -0.02 3.17 15 22 H 0.09 2.42 8.14 -2.39 -0.02 2.40 15 23 H 0.03 1.29 8.14 -2.39 -0.02 1.27 15 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 25 H 0.28 14.06 8.29 -92.70 -0.77 13.29 15 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 27 H 0.08 3.03 7.45 -2.39 -0.02 3.02 15 28 H 0.08 2.77 8.14 -2.39 -0.02 2.75 15 Total: -1.00 -71.20 247.01 4.84 -66.35 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.14 Total: 14.53 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 5.33 Total: 10.20 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -3.65 Total: -130.53 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Total: -71.20 4.84 -66.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708290588.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.739 kcal (2) G-P(sol) polarization free energy of solvation -71.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds