Wall clock time and date at job start Mon Mar 30 2020 03:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00312 * 2 1 4 4 H 1.48493 * 109.46855 * 269.99678 * 3 2 1 5 5 H 1.48498 * 109.46768 * 30.00153 * 3 2 1 6 6 H 1.48502 * 109.47094 * 149.99959 * 3 2 1 7 7 C 1.37879 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99834 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00242 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.52922 * 300.09856 * 9 7 2 11 11 C 1.53099 * 109.50482 * 60.17580 * 9 7 2 12 12 C 1.53126 * 109.15071 * 62.29310 * 11 9 7 13 13 C 1.53039 * 109.28009 * 57.65227 * 12 11 9 14 14 N 1.46854 * 109.52227 * 300.82107 * 13 12 11 15 15 C 1.46847 * 111.19790 * 61.74204 * 14 13 12 16 16 H 1.09002 * 109.46481 * 58.27472 * 15 14 13 17 17 C 1.53005 * 109.45924 * 178.25260 * 15 14 13 18 18 C 1.52994 * 117.49875 * 8.76685 * 17 15 14 19 19 C 1.52994 * 117.49647 * 300.10419 * 17 15 14 20 20 H 0.97003 * 120.00063 * 359.97438 * 1 2 3 21 21 H 1.08990 * 109.52931 * 302.39057 * 11 9 7 22 22 H 1.09002 * 109.57693 * 182.22588 * 11 9 7 23 23 H 1.08994 * 109.50076 * 297.71308 * 12 11 9 24 24 H 1.09000 * 109.50123 * 177.59308 * 12 11 9 25 25 H 1.08993 * 109.46667 * 180.80353 * 13 12 11 26 26 H 1.09008 * 109.45973 * 60.82938 * 13 12 11 27 27 H 1.00893 * 110.99835 * 297.64287 * 14 13 12 28 28 H 1.09002 * 115.54580 * 154.43808 * 17 15 14 29 29 H 1.09002 * 117.49869 * 0.02562 * 18 17 15 30 30 H 1.09004 * 117.49817 * 145.01822 * 18 17 15 31 31 H 1.09000 * 117.49736 * 214.97567 * 19 17 15 32 32 H 1.08993 * 117.50295 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6222 -2.5578 0.8868 11 6 0.3742 -2.5822 -1.2541 12 6 1.2693 -2.5595 -2.4963 13 6 2.2626 -3.7216 -2.4246 14 7 3.0777 -3.5963 -1.2095 15 6 2.2447 -3.6630 -0.0021 16 1 1.6990 -4.6065 0.0111 17 6 3.1363 -3.5724 1.2380 18 6 4.6124 -3.2319 1.0234 19 6 4.2041 -4.6528 1.4207 20 1 -0.4850 0.8401 0.0004 21 1 -0.3060 -1.7310 -1.2797 22 1 -0.2011 -3.5078 -1.2365 23 1 1.8146 -1.6166 -2.5346 24 1 0.6539 -2.6614 -3.3901 25 1 2.9108 -3.6999 -3.3006 26 1 1.7168 -4.6649 -2.4001 27 1 3.6232 -2.7477 -1.2260 28 1 2.6553 -3.1833 2.1354 29 1 4.9482 -3.0720 -0.0012 30 1 5.1026 -2.6191 1.7799 31 1 4.4260 -4.9741 2.4383 32 1 4.2712 -5.4282 0.6577 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709911921.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:29 Heat of formation + Delta-G solvation = 13.425531 kcal Electronic energy + Delta-G solvation = -13119.242761 eV Core-core repulsion = 11079.787018 eV Total energy + Delta-G solvation = -2039.455742 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.64686 -35.48771 -32.76623 -29.95605 -29.64353 -25.04194 -23.42905 -21.85185 -21.43953 -19.33478 -18.84194 -15.88089 -15.45304 -14.81978 -14.24318 -13.62923 -13.36955 -12.88946 -12.67266 -11.74622 -11.68646 -11.29699 -10.94040 -10.75136 -10.65772 -10.59423 -10.14829 -10.05386 -9.77046 -9.57879 -9.31013 -9.05405 -8.63418 -8.33028 -7.25363 -5.96590 -4.01614 3.28997 3.36817 3.39677 4.43747 4.60109 5.22403 5.34105 5.52232 5.75566 5.79413 5.87342 6.11588 6.24574 6.27010 6.37849 6.48307 6.58235 6.69329 6.73502 6.75477 6.83643 7.00602 7.07505 7.35638 7.44645 7.66252 7.82671 7.99701 8.15433 8.38787 8.47905 9.01161 9.61899 11.08878 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.031394 B = 0.016202 C = 0.012843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.663160 B = 1727.745878 C = 2179.727863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.498 4.498 8 H 0.058 0.942 9 C 0.021 3.979 10 H 0.026 0.974 11 C -0.111 4.111 12 C -0.140 4.140 13 C 0.063 3.937 14 N -0.681 5.681 15 C 0.121 3.879 16 H 0.055 0.945 17 C -0.115 4.115 18 C -0.170 4.170 19 C -0.190 4.190 20 H 0.258 0.742 21 H 0.090 0.910 22 H 0.013 0.987 23 H 0.067 0.933 24 H 0.034 0.966 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.343 0.657 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.547 -5.271 -1.110 7.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.536 4.536 8 H 0.076 0.924 9 C 0.001 3.999 10 H 0.044 0.956 11 C -0.149 4.149 12 C -0.179 4.179 13 C -0.067 4.067 14 N -0.312 5.312 15 C 0.011 3.989 16 H 0.073 0.927 17 C -0.133 4.133 18 C -0.208 4.208 19 C -0.228 4.228 20 H 0.068 0.932 21 H 0.109 0.891 22 H 0.032 0.968 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.162 0.838 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.570 -5.821 -1.087 7.480 hybrid contribution -0.100 1.968 -0.027 1.971 sum 4.471 -3.853 -1.115 6.006 Atomic orbital electron populations 1.69872 1.05874 1.26138 1.51127 1.24933 0.94721 0.98822 0.95472 0.86721 0.80016 0.84077 0.77968 1.20916 1.21454 1.19922 1.21067 0.92777 0.90162 1.49633 0.92386 1.19287 0.93297 0.92915 0.94373 0.95594 1.21557 0.98469 0.99725 0.95103 1.22063 0.98588 0.99403 0.97888 1.21862 0.94701 0.97674 0.92493 1.61028 1.25139 1.43452 1.01593 1.21047 0.92554 0.97977 0.87291 0.92682 1.22183 0.90354 1.01144 0.99647 1.22743 0.98737 0.97290 1.01999 1.22889 1.06357 0.92764 1.00744 0.93217 0.89119 0.96836 0.91455 0.94702 0.92728 0.92720 0.83757 0.88264 0.88450 0.90394 0.90525 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 11.32 55.43 0.63 -24.45 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 3 Si 0.88 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.50 -12.80 6.25 -34.44 -0.22 -13.01 16 8 H 0.06 1.48 6.04 -52.48 -0.32 1.16 16 9 C 0.02 0.50 2.12 -91.70 -0.19 0.31 16 10 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 11 C -0.11 -2.60 5.32 -26.62 -0.14 -2.74 16 12 C -0.14 -2.93 5.82 -26.65 -0.16 -3.08 16 13 C 0.06 1.16 6.55 -3.83 -0.03 1.13 16 14 N -0.68 -13.14 5.56 -106.75 -0.59 -13.74 16 15 C 0.12 2.49 2.52 -67.72 -0.17 2.32 16 16 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 17 C -0.11 -2.20 4.82 -90.62 -0.44 -2.63 16 18 C -0.17 -2.98 9.13 -26.70 -0.24 -3.23 16 19 C -0.19 -3.11 10.17 -26.70 -0.27 -3.39 16 20 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 21 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 22 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.07 1.54 7.35 -51.93 -0.38 1.16 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 27 H 0.34 6.91 5.68 -39.30 -0.22 6.69 16 28 H 0.10 2.00 8.11 -51.93 -0.42 1.58 16 29 H 0.10 1.72 6.20 -51.93 -0.32 1.40 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 246.77 15.07 3.72 3.72 Total: -1.00 -26.48 246.77 -8.14 -34.61 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.92 Total: 6.63 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -1.95 Total: -22.76 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.03 Total: -38.18 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -26.48 -8.14 -34.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709911921.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.037 kcal (2) G-P(sol) polarization free energy of solvation -26.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds