Wall clock time and date at job start Mon Mar 30 2020 03:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00312 * 2 1 4 4 H 1.48493 * 109.46855 * 269.99678 * 3 2 1 5 5 H 1.48498 * 109.46768 * 30.00153 * 3 2 1 6 6 H 1.48502 * 109.47094 * 149.99959 * 3 2 1 7 7 C 1.37879 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99834 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00242 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.52922 * 300.09856 * 9 7 2 11 11 C 1.53099 * 109.50482 * 60.17580 * 9 7 2 12 12 C 1.53126 * 109.15071 * 62.29310 * 11 9 7 13 13 C 1.53039 * 109.28009 * 57.65227 * 12 11 9 14 14 N 1.46854 * 109.52227 * 300.82107 * 13 12 11 15 15 C 1.46847 * 111.19790 * 61.74204 * 14 13 12 16 16 H 1.09002 * 109.46481 * 58.27472 * 15 14 13 17 17 C 1.53005 * 109.45924 * 178.25260 * 15 14 13 18 18 C 1.52994 * 117.49875 * 8.76685 * 17 15 14 19 19 C 1.52994 * 117.49647 * 300.10419 * 17 15 14 20 20 H 0.97003 * 120.00063 * 359.97438 * 1 2 3 21 21 H 1.08990 * 109.52931 * 302.39057 * 11 9 7 22 22 H 1.09002 * 109.57693 * 182.22588 * 11 9 7 23 23 H 1.08994 * 109.50076 * 297.71308 * 12 11 9 24 24 H 1.09000 * 109.50123 * 177.59308 * 12 11 9 25 25 H 1.08993 * 109.46667 * 180.80353 * 13 12 11 26 26 H 1.09008 * 109.45973 * 60.82938 * 13 12 11 27 27 H 1.00893 * 110.99835 * 297.64287 * 14 13 12 28 28 H 1.09002 * 115.54580 * 154.43808 * 17 15 14 29 29 H 1.09002 * 117.49869 * 0.02562 * 18 17 15 30 30 H 1.09004 * 117.49817 * 145.01822 * 18 17 15 31 31 H 1.09000 * 117.49736 * 214.97567 * 19 17 15 32 32 H 1.08993 * 117.50295 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6222 -2.5578 0.8868 11 6 0.3742 -2.5822 -1.2541 12 6 1.2693 -2.5595 -2.4963 13 6 2.2626 -3.7216 -2.4246 14 7 3.0777 -3.5963 -1.2095 15 6 2.2447 -3.6630 -0.0021 16 1 1.6990 -4.6065 0.0111 17 6 3.1363 -3.5724 1.2380 18 6 4.6124 -3.2319 1.0234 19 6 4.2041 -4.6528 1.4207 20 1 -0.4850 0.8401 0.0004 21 1 -0.3060 -1.7310 -1.2797 22 1 -0.2011 -3.5078 -1.2365 23 1 1.8146 -1.6166 -2.5346 24 1 0.6539 -2.6614 -3.3901 25 1 2.9108 -3.6999 -3.3006 26 1 1.7168 -4.6649 -2.4001 27 1 3.6232 -2.7477 -1.2260 28 1 2.6553 -3.1833 2.1354 29 1 4.9482 -3.0720 -0.0012 30 1 5.1026 -2.6191 1.7799 31 1 4.4260 -4.9741 2.4383 32 1 4.2712 -5.4282 0.6577 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709911921.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:29 Heat of formation + Delta-G solvation = -1.678517 kcal Electronic energy + Delta-G solvation = -13119.897722 eV Core-core repulsion = 11079.787018 eV Total energy + Delta-G solvation = -2040.110703 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.29197 -37.01279 -34.71058 -31.74620 -31.35358 -27.02673 -25.05047 -23.39000 -22.96698 -21.02960 -20.53093 -17.84317 -16.98598 -16.71959 -15.81774 -15.35228 -15.08779 -14.68421 -14.18705 -13.55363 -13.46894 -12.95553 -12.79731 -12.47537 -12.35532 -12.11918 -11.92770 -11.78095 -11.55227 -11.21864 -10.96907 -10.67296 -10.41215 -10.35679 -8.92715 -8.02142 -6.12414 1.39335 1.42145 1.50126 2.45016 3.17812 3.26982 3.66834 4.07131 4.26047 4.32912 4.39187 4.50992 4.62847 4.76535 4.94316 4.96089 4.97015 5.02025 5.08917 5.21698 5.30253 5.46871 5.52488 5.55416 5.60917 5.69475 5.87432 6.09928 6.37730 6.49916 6.75062 6.97916 7.53518 9.02115 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.031394 B = 0.016202 C = 0.012843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.663160 B = 1727.745878 C = 2179.727863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.941 3.059 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.491 4.491 8 H 0.062 0.938 9 C 0.019 3.981 10 H -0.015 1.015 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.066 3.934 14 N -0.669 5.669 15 C 0.131 3.869 16 H 0.055 0.945 17 C -0.143 4.143 18 C -0.169 4.169 19 C -0.160 4.160 20 H 0.254 0.746 21 H 0.055 0.945 22 H 0.021 0.979 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.339 0.661 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.411 -6.148 -1.694 9.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.768 3.232 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.530 4.530 8 H 0.080 0.920 9 C -0.001 4.001 10 H 0.004 0.996 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.064 4.064 14 N -0.299 5.299 15 C 0.021 3.979 16 H 0.074 0.926 17 C -0.162 4.162 18 C -0.206 4.206 19 C -0.197 4.197 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.039 0.961 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.158 0.842 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.452 -6.709 -1.675 9.457 hybrid contribution -0.721 2.207 0.170 2.328 sum 5.730 -4.501 -1.505 7.441 Atomic orbital electron populations 1.70030 1.07231 1.26451 1.52652 1.25641 0.95367 1.01934 0.95777 0.85802 0.78975 0.80455 0.77921 1.20544 1.21958 1.19067 1.21289 0.92904 0.90753 1.48036 0.92035 1.19282 0.93667 0.94237 0.92918 0.99641 1.21464 0.98474 0.98506 0.96428 1.21976 0.98667 0.99499 0.97042 1.21941 0.94543 0.96842 0.93095 1.61063 1.24585 1.42909 1.01363 1.20848 0.92194 0.96114 0.88783 0.92641 1.22046 0.91167 1.04568 0.98422 1.22807 0.96914 0.98533 1.02369 1.22918 1.02706 0.91984 1.02121 0.93642 0.92656 0.96067 0.93741 0.92980 0.89905 0.91590 0.84176 0.90114 0.88409 0.89651 0.88424 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.46 11.32 21.45 0.24 -53.21 16 2 C 0.01 0.55 5.30 84.66 0.45 1.00 16 3 Si 0.94 43.33 29.54 68.60 2.03 45.36 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.49 -25.40 6.25 25.60 0.16 -25.24 16 8 H 0.06 3.09 6.04 -2.91 -0.02 3.07 16 9 C 0.02 0.92 2.12 -11.49 -0.02 0.89 16 10 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 11 C -0.11 -5.25 5.32 30.67 0.16 -5.09 16 12 C -0.13 -5.37 5.82 30.65 0.18 -5.19 16 13 C 0.07 2.24 6.55 86.32 0.57 2.80 16 14 N -0.67 -24.27 5.56 -491.66 -2.73 -27.01 16 15 C 0.13 5.26 2.52 44.94 0.11 5.38 16 16 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 17 C -0.14 -5.32 4.82 -10.80 -0.05 -5.37 16 18 C -0.17 -5.51 9.13 30.62 0.28 -5.23 16 19 C -0.16 -4.75 10.17 30.62 0.31 -4.44 16 20 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 21 H 0.05 3.03 6.04 -2.39 -0.01 3.01 16 22 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.04 1.99 7.35 -2.39 -0.02 1.97 16 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 27 H 0.34 12.92 5.68 -89.70 -0.51 12.42 16 28 H 0.08 3.27 8.11 -2.39 -0.02 3.25 16 29 H 0.10 3.19 6.20 -2.39 -0.01 3.17 16 30 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -56.62 246.77 2.26 -54.36 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.58 Total: 20.99 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 2.14 Total: -40.49 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -2.49 Total: -80.22 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -56.62 2.26 -54.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709911921.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.680 kcal (2) G-P(sol) polarization free energy of solvation -56.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds