Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00286 * 2 1 4 4 H 1.48500 * 109.47534 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47028 * 299.99504 * 3 2 1 6 6 H 1.48506 * 109.47456 * 59.99445 * 3 2 1 7 7 C 1.37883 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99360 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00411 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.53556 * 59.89867 * 9 7 2 11 11 C 1.53126 * 109.50302 * 299.80385 * 9 7 2 12 12 C 1.53113 * 109.15822 * 297.71144 * 11 9 7 13 13 C 1.53040 * 109.27967 * 302.34514 * 12 11 9 14 14 N 1.46852 * 109.52090 * 59.18199 * 13 12 11 15 15 C 1.46848 * 111.19657 * 298.25697 * 14 13 12 16 16 H 1.09002 * 109.44933 * 301.73268 * 15 14 13 17 17 C 1.53002 * 109.45879 * 181.76014 * 15 14 13 18 18 C 1.53002 * 117.49773 * 64.94984 * 17 15 14 19 19 C 1.53000 * 60.02940 * 252.51785 * 18 17 15 20 20 H 0.97002 * 119.99957 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.52200 * 57.61538 * 11 9 7 22 22 H 1.08997 * 109.52144 * 177.80804 * 11 9 7 23 23 H 1.09002 * 109.50380 * 62.28787 * 12 11 9 24 24 H 1.08998 * 109.50521 * 182.36282 * 12 11 9 25 25 H 1.09001 * 109.46124 * 179.19330 * 13 12 11 26 26 H 1.09000 * 109.45935 * 299.17370 * 13 12 11 27 27 H 1.00907 * 110.99484 * 174.16308 * 14 13 12 28 28 H 1.09000 * 115.55766 * 210.63300 * 17 15 14 29 29 H 1.09002 * 117.49918 * 145.01819 * 18 17 15 30 30 H 1.09002 * 117.49754 * 0.02562 * 18 17 15 31 31 H 1.09008 * 117.49673 * 107.47884 * 19 18 17 32 32 H 1.08999 * 117.49942 * 252.47315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6229 -2.5575 -0.8884 11 6 0.3736 -2.5830 1.2527 12 6 1.2679 -2.5609 2.4953 13 6 2.2612 -3.7230 2.4236 14 7 3.0771 -3.5969 1.2091 15 6 2.2447 -3.6629 0.0011 16 1 1.6992 -4.6065 -0.0126 17 6 3.1371 -3.5719 -1.2384 18 6 4.1244 -4.7149 -1.4835 19 6 4.6353 -3.3506 -1.0158 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3067 -1.7317 1.2784 22 1 -0.2008 -3.5091 1.2337 23 1 1.8132 -1.6179 2.5346 24 1 0.6520 -2.6625 3.3888 25 1 2.9090 -3.7016 3.3000 26 1 1.7155 -4.6661 2.3982 27 1 3.8030 -4.2974 1.1869 28 1 2.6830 -3.1032 -2.1114 29 1 4.3198 -4.9979 -2.5178 30 1 4.1378 -5.5318 -0.7620 31 1 4.9846 -3.2699 0.0136 32 1 5.1673 -2.7364 -1.7423 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709911924.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = 3.004185 kcal Electronic energy + Delta-G solvation = -13081.283618 eV Core-core repulsion = 11041.375973 eV Total energy + Delta-G solvation = -2039.907646 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.16097 -37.01607 -34.73214 -32.02891 -31.31683 -26.88011 -25.17251 -23.35066 -23.00407 -21.03458 -20.10232 -17.72174 -17.59797 -16.47911 -15.98454 -15.23976 -14.94076 -14.67434 -14.15719 -13.82180 -13.43161 -13.25269 -12.81807 -12.42154 -12.30409 -12.14259 -11.91988 -11.53570 -11.40110 -11.10597 -10.91891 -10.56522 -10.38367 -10.24035 -9.00339 -7.93150 -5.97523 1.41593 1.45037 1.55816 2.53174 3.11884 3.34444 3.58046 4.02909 4.22864 4.31009 4.35127 4.41747 4.62527 4.72035 4.82004 4.90113 4.94184 5.02358 5.14153 5.17902 5.28375 5.41887 5.54291 5.57490 5.67375 5.78427 5.97677 6.20122 6.41563 6.63514 6.86178 7.11744 7.65692 9.12818 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.031504 B = 0.015947 C = 0.012705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.571408 B = 1755.446620 C = 2203.300040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.458 4.458 8 H 0.060 0.940 9 C 0.049 3.951 10 H -0.013 1.013 11 C -0.113 4.113 12 C -0.098 4.098 13 C 0.071 3.929 14 N -0.673 5.673 15 C 0.137 3.863 16 H 0.014 0.986 17 C -0.147 4.147 18 C -0.172 4.172 19 C -0.162 4.162 20 H 0.252 0.748 21 H 0.058 0.942 22 H 0.018 0.982 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.024 0.976 27 H 0.337 0.663 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.718 -8.180 1.684 10.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.497 4.497 8 H 0.078 0.922 9 C 0.031 3.969 10 H 0.005 0.995 11 C -0.151 4.151 12 C -0.135 4.135 13 C -0.058 4.058 14 N -0.305 5.305 15 C 0.028 3.972 16 H 0.031 0.969 17 C -0.166 4.166 18 C -0.209 4.209 19 C -0.199 4.199 20 H 0.061 0.939 21 H 0.077 0.923 22 H 0.037 0.963 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.102 0.898 26 H 0.042 0.958 27 H 0.157 0.843 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.598 -7.378 1.705 10.043 hybrid contribution -0.401 0.372 -0.211 0.587 sum 6.197 -7.006 1.493 9.471 Atomic orbital electron populations 1.70031 1.07005 1.26037 1.54336 1.25637 0.95405 1.01741 0.96775 0.85760 0.79446 0.81144 0.76822 1.19205 1.21602 1.21558 1.21279 0.93042 0.90179 1.45165 0.92161 1.18738 0.92174 0.93433 0.92591 0.99473 1.21507 0.98460 0.98418 0.96760 1.21341 0.96889 0.98752 0.96565 1.21820 0.95170 0.95929 0.92884 1.60212 1.14662 1.54457 1.01212 1.20810 0.92614 0.95391 0.88429 0.96856 1.22097 0.92344 1.03574 0.98566 1.23076 1.03544 0.91761 1.02538 1.22834 0.95693 0.98800 1.02607 0.93905 0.92329 0.96328 0.93429 0.92714 0.89811 0.95789 0.84340 0.90118 0.88089 0.88305 0.87804 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 11.32 21.45 0.24 -55.00 16 2 C 0.00 -0.02 5.30 84.66 0.45 0.43 16 3 Si 0.94 45.30 29.54 68.60 2.03 47.32 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.46 -24.82 6.49 25.60 0.17 -24.66 16 8 H 0.06 3.30 7.16 -2.91 -0.02 3.28 16 9 C 0.05 2.48 2.10 -11.49 -0.02 2.46 16 10 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 11 C -0.11 -5.49 5.32 30.67 0.16 -5.33 16 12 C -0.10 -4.08 5.84 30.65 0.18 -3.90 16 13 C 0.07 2.44 6.55 86.33 0.57 3.00 16 14 N -0.67 -24.25 4.97 -491.67 -2.44 -26.69 16 15 C 0.14 5.55 2.46 44.94 0.11 5.66 16 16 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 17 C -0.15 -5.44 4.78 -10.77 -0.05 -5.49 16 18 C -0.17 -4.74 9.93 30.60 0.30 -4.43 16 19 C -0.16 -5.17 9.48 30.62 0.29 -4.88 16 20 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 21 H 0.06 3.26 6.04 -2.38 -0.01 3.24 16 22 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.05 2.25 7.35 -2.39 -0.02 2.24 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.34 10.07 7.16 -89.69 -0.64 9.42 16 28 H 0.08 3.33 8.07 -2.39 -0.02 3.31 16 29 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.10 2.39 7.98 -2.39 -0.02 2.37 16 31 H 0.10 3.30 6.45 -2.38 -0.02 3.29 16 32 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -60.45 249.06 2.42 -58.03 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.45 Total: 13.48 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 2.15 Total: -37.13 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -2.20 Total: -81.69 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -60.45 2.42 -58.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709911924.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.030 kcal (2) G-P(sol) polarization free energy of solvation -60.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds