Wall clock time and date at job start Mon Mar 30 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.92481 * 333.01998 * 10 9 7 12 12 C 1.53904 * 113.70704 * 104.50660 * 10 9 7 13 13 C 1.54161 * 86.82482 * 139.94799 * 12 10 9 14 14 H 1.08997 * 113.01272 * 220.80372 * 13 12 10 15 15 C 1.51992 * 112.36308 * 92.31893 * 13 12 10 16 16 C 1.52519 * 111.38433 * 223.51130 * 15 13 12 17 17 C 1.53113 * 108.92676 * 57.53057 * 16 15 13 18 18 C 1.52590 * 108.83321 * 291.93549 * 17 16 15 19 19 C 1.51415 * 111.53545 * 56.89972 * 18 17 16 20 20 H 1.08998 * 111.20412 * 191.20817 * 19 18 17 21 21 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 22 22 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 23 23 H 1.08998 * 113.65342 * 254.43137 * 12 10 9 24 24 H 1.08997 * 113.65152 * 25.37416 * 12 10 9 25 25 H 1.09001 * 109.09831 * 344.00304 * 15 13 12 26 26 H 1.08998 * 109.09573 * 103.02058 * 15 13 12 27 27 H 1.09002 * 109.56499 * 177.36318 * 16 15 13 28 28 H 1.08996 * 109.56360 * 297.69698 * 16 15 13 29 29 H 1.09001 * 109.57822 * 51.74151 * 17 16 15 30 30 H 1.09000 * 109.58340 * 172.00241 * 17 16 15 31 31 H 1.08995 * 109.06705 * 177.42350 * 18 17 16 32 32 H 1.08993 * 109.06259 * 296.37142 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0452 -3.5770 -0.4549 12 6 2.0619 -4.3691 1.3648 13 6 1.8736 -5.6839 0.5824 14 1 1.1676 -6.3650 1.0574 15 6 3.1966 -6.3568 0.2553 16 6 3.2192 -6.8705 -1.1806 17 6 2.9561 -5.6994 -2.1312 18 6 1.5153 -5.2312 -1.9491 19 6 1.2337 -4.8454 -0.5122 20 1 0.1663 -4.7019 -0.3445 21 1 -0.4850 0.8401 0.0004 22 1 0.3557 -2.3880 0.0005 23 1 3.0154 -4.3048 1.8890 24 1 1.2126 -4.1087 1.9963 25 1 4.0051 -5.6382 0.3898 26 1 3.3486 -7.1944 0.9361 27 1 4.1952 -7.3045 -1.3977 28 1 2.4449 -7.6266 -1.3101 29 1 3.6381 -4.8810 -1.9001 30 1 3.1096 -6.0229 -3.1607 31 1 1.3375 -4.3683 -2.5907 32 1 0.8401 -6.0355 -2.2407 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712431205.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:05 Heat of formation + Delta-G solvation = 8.161878 kcal Electronic energy + Delta-G solvation = -12660.348373 eV Core-core repulsion = 10620.664381 eV Total energy + Delta-G solvation = -2039.683992 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89665 -34.58573 -32.87034 -30.90899 -29.69849 -25.62460 -24.21687 -22.47565 -21.50913 -20.48438 -17.69085 -16.74881 -15.66181 -14.55851 -14.09485 -13.96049 -13.66977 -13.34450 -12.99323 -12.07852 -11.93910 -11.59543 -11.29730 -11.04331 -10.86347 -10.78534 -10.58622 -10.47873 -10.17986 -9.82226 -9.59306 -9.40900 -9.07749 -8.77525 -6.88291 -5.73188 -3.01058 3.46029 3.50236 3.51388 4.63069 4.92229 4.98670 5.11193 5.43984 5.45064 5.53217 5.66015 5.73473 5.78018 5.94099 5.95592 6.09479 6.14517 6.26873 6.29812 6.37639 6.46811 6.53564 6.58552 6.61667 6.72612 6.75499 7.13582 7.26979 7.73663 8.46088 9.56546 10.16841 10.51173 11.49425 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057253 B = 0.009008 C = 0.008870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.939929 B = 3107.734349 C = 3156.124748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.714 5.714 10 C 0.171 3.829 11 H 0.074 0.926 12 C -0.167 4.167 13 C -0.104 4.104 14 H 0.061 0.939 15 C -0.098 4.098 16 C -0.115 4.115 17 C -0.118 4.118 18 C -0.102 4.102 19 C -0.115 4.115 20 H 0.078 0.922 21 H 0.255 0.745 22 H 0.384 0.616 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 -12.344 -1.554 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.352 5.352 10 C 0.059 3.941 11 H 0.092 0.908 12 C -0.209 4.209 13 C -0.123 4.123 14 H 0.080 0.920 15 C -0.135 4.135 16 C -0.152 4.152 17 C -0.156 4.156 18 C -0.140 4.140 19 C -0.135 4.135 20 H 0.096 0.904 21 H 0.065 0.935 22 H 0.218 0.782 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.879 -12.146 -1.567 13.182 hybrid contribution 0.041 0.943 0.127 0.952 sum 4.919 -11.203 -1.440 12.320 Atomic orbital electron populations 1.69654 1.05104 1.25712 1.57812 1.24748 0.95511 0.97687 1.03118 0.86279 0.78533 0.83636 0.77830 1.21708 1.21300 1.21296 1.19256 0.91002 0.84320 1.42490 0.91275 1.42428 1.05693 0.99975 1.87125 1.21650 0.95010 0.84691 0.92726 0.90847 1.24034 1.00867 0.95937 1.00016 1.21656 0.96484 0.95938 0.98231 0.92014 1.21038 0.96959 0.99446 0.96065 1.21405 1.00648 0.97808 0.95351 1.21468 0.97709 0.98071 0.98310 1.20915 0.95782 1.00370 0.96933 1.22268 1.00159 0.97760 0.93269 0.90374 0.93500 0.78226 0.92823 0.90821 0.91987 0.92690 0.92611 0.92377 0.91681 0.92648 0.91706 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.80 9.98 -15.06 -0.15 -6.95 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -18.47 5.42 -52.73 -0.29 -18.76 16 10 C 0.17 3.53 3.67 -67.21 -0.25 3.28 16 11 H 0.07 1.54 6.82 -51.93 -0.35 1.18 16 12 C -0.17 -3.09 7.32 -25.67 -0.19 -3.28 16 13 C -0.10 -1.62 4.10 -91.03 -0.37 -1.99 16 14 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 15 C -0.10 -1.31 5.43 -27.49 -0.15 -1.46 16 16 C -0.11 -1.41 5.91 -26.92 -0.16 -1.57 16 17 C -0.12 -1.62 5.72 -26.88 -0.15 -1.78 16 18 C -0.10 -1.60 5.60 -27.74 -0.16 -1.75 16 19 C -0.11 -2.00 3.55 -91.69 -0.33 -2.32 16 20 H 0.08 1.44 8.06 -51.93 -0.42 1.02 16 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.38 10.53 7.86 -40.82 -0.32 10.21 16 23 H 0.05 0.95 7.88 -51.93 -0.41 0.54 16 24 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 25 H 0.06 0.87 7.58 -51.93 -0.39 0.47 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.06 0.97 6.92 -51.93 -0.36 0.61 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 252.49 15.07 3.81 3.81 Total: -1.00 -29.67 252.49 -7.96 -37.63 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.18 Total: 5.94 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -2.00 Total: -18.35 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.44 Total: -46.73 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.67 -7.96 -37.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712431205.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.794 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds