Wall clock time and date at job start Mon Mar 30 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.92481 * 333.01998 * 10 9 7 12 12 C 1.53904 * 113.70704 * 104.50660 * 10 9 7 13 13 C 1.54161 * 86.82482 * 139.94799 * 12 10 9 14 14 H 1.08997 * 113.01272 * 220.80372 * 13 12 10 15 15 C 1.51992 * 112.36308 * 92.31893 * 13 12 10 16 16 C 1.52519 * 111.38433 * 223.51130 * 15 13 12 17 17 C 1.53113 * 108.92676 * 57.53057 * 16 15 13 18 18 C 1.52590 * 108.83321 * 291.93549 * 17 16 15 19 19 C 1.51415 * 111.53545 * 56.89972 * 18 17 16 20 20 H 1.08998 * 111.20412 * 191.20817 * 19 18 17 21 21 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 22 22 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 23 23 H 1.08998 * 113.65342 * 254.43137 * 12 10 9 24 24 H 1.08997 * 113.65152 * 25.37416 * 12 10 9 25 25 H 1.09001 * 109.09831 * 344.00304 * 15 13 12 26 26 H 1.08998 * 109.09573 * 103.02058 * 15 13 12 27 27 H 1.09002 * 109.56499 * 177.36318 * 16 15 13 28 28 H 1.08996 * 109.56360 * 297.69698 * 16 15 13 29 29 H 1.09001 * 109.57822 * 51.74151 * 17 16 15 30 30 H 1.09000 * 109.58340 * 172.00241 * 17 16 15 31 31 H 1.08995 * 109.06705 * 177.42350 * 18 17 16 32 32 H 1.08993 * 109.06259 * 296.37142 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0452 -3.5770 -0.4549 12 6 2.0619 -4.3691 1.3648 13 6 1.8736 -5.6839 0.5824 14 1 1.1676 -6.3650 1.0574 15 6 3.1966 -6.3568 0.2553 16 6 3.2192 -6.8705 -1.1806 17 6 2.9561 -5.6994 -2.1312 18 6 1.5153 -5.2312 -1.9491 19 6 1.2337 -4.8454 -0.5122 20 1 0.1663 -4.7019 -0.3445 21 1 -0.4850 0.8401 0.0004 22 1 0.3557 -2.3880 0.0005 23 1 3.0154 -4.3048 1.8890 24 1 1.2126 -4.1087 1.9963 25 1 4.0051 -5.6382 0.3898 26 1 3.3486 -7.1944 0.9361 27 1 4.1952 -7.3045 -1.3977 28 1 2.4449 -7.6266 -1.3101 29 1 3.6381 -4.8810 -1.9001 30 1 3.1096 -6.0229 -3.1607 31 1 1.3375 -4.3683 -2.5907 32 1 0.8401 -6.0355 -2.2407 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712431205.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:05 Heat of formation + Delta-G solvation = -9.401376 kcal Electronic energy + Delta-G solvation = -12661.109972 eV Core-core repulsion = 10620.664381 eV Total energy + Delta-G solvation = -2040.445591 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.28604 -36.24141 -34.56055 -32.39852 -31.43124 -27.11580 -26.03917 -23.95394 -22.94499 -21.78477 -19.49555 -18.42289 -17.24393 -16.19044 -15.69169 -15.44104 -15.08534 -14.72079 -14.56966 -13.65481 -13.30199 -13.24182 -12.88746 -12.63412 -12.49809 -12.30220 -12.21119 -11.95431 -11.76711 -11.65390 -10.94672 -10.90170 -10.59148 -10.54424 -8.96733 -7.95248 -5.23545 1.45049 1.48533 1.54680 2.55650 3.36071 3.66724 3.71387 3.85251 4.16306 4.22262 4.26204 4.40915 4.45130 4.61323 4.63515 4.81675 4.89513 4.96711 5.06066 5.15565 5.20544 5.22525 5.33676 5.35889 5.42793 5.45131 5.57801 5.74768 5.79950 6.27309 7.32075 8.10642 8.33776 9.28138 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057253 B = 0.009008 C = 0.008870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.939929 B = 3107.734349 C = 3156.124748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.294 1.294 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.074 0.926 9 N -0.730 5.730 10 C 0.152 3.848 11 H 0.070 0.930 12 C -0.166 4.166 13 C -0.083 4.083 14 H 0.078 0.922 15 C -0.098 4.098 16 C -0.109 4.109 17 C -0.117 4.117 18 C -0.102 4.102 19 C -0.108 4.108 20 H 0.062 0.938 21 H 0.251 0.749 22 H 0.371 0.629 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.169 -14.014 -1.723 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.221 1.221 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.092 0.908 9 N -0.367 5.367 10 C 0.043 3.957 11 H 0.088 0.912 12 C -0.206 4.206 13 C -0.102 4.102 14 H 0.096 0.904 15 C -0.136 4.136 16 C -0.146 4.146 17 C -0.155 4.155 18 C -0.139 4.139 19 C -0.128 4.128 20 H 0.080 0.920 21 H 0.060 0.940 22 H 0.203 0.797 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.313 -13.864 -1.734 15.332 hybrid contribution -0.384 1.407 0.180 1.469 sum 5.929 -12.458 -1.554 13.884 Atomic orbital electron populations 1.69820 1.06650 1.26104 1.59677 1.25590 0.96415 1.01168 1.03859 0.85208 0.77219 0.79140 0.78210 1.22059 1.20409 1.20318 1.19649 0.91407 0.85506 1.40963 0.90832 1.42625 1.05254 1.01218 1.87623 1.21994 0.95062 0.83806 0.94835 0.91231 1.23899 1.00503 0.97613 0.98628 1.21613 0.98003 0.94738 0.95897 0.90356 1.21078 0.94894 0.99896 0.97685 1.21391 1.02392 0.97162 0.93666 1.21471 0.95592 0.98319 1.00085 1.20908 0.97929 1.00122 0.94959 1.22178 0.98813 0.96515 0.95320 0.91957 0.94032 0.79719 0.92205 0.92532 0.92807 0.90258 0.90383 0.91107 0.93388 0.90771 0.94171 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.18 13.06 21.65 0.28 -60.90 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 3 Si 0.97 47.23 29.55 68.60 2.03 49.26 16 4 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 7 C -0.24 -14.04 9.98 84.03 0.84 -13.21 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 9 N -0.73 -38.78 5.42 -320.74 -1.74 -40.52 16 10 C 0.15 6.34 3.67 45.46 0.17 6.51 16 11 H 0.07 2.93 6.82 -2.39 -0.02 2.92 16 12 C -0.17 -6.04 7.32 31.28 0.23 -5.81 16 13 C -0.08 -2.42 4.10 -11.06 -0.05 -2.46 16 14 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 15 C -0.10 -2.30 5.43 30.10 0.16 -2.13 16 16 C -0.11 -2.24 5.91 30.47 0.18 -2.06 16 17 C -0.12 -2.94 5.72 30.50 0.17 -2.77 16 18 C -0.10 -3.05 5.60 29.94 0.17 -2.88 16 19 C -0.11 -3.72 3.55 -11.49 -0.04 -3.76 16 20 H 0.06 2.32 8.06 -2.39 -0.02 2.30 16 21 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 22 H 0.37 21.19 7.86 -92.71 -0.73 20.46 16 23 H 0.06 2.07 7.88 -2.39 -0.02 2.05 16 24 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.05 1.36 7.58 -2.39 -0.02 1.34 16 26 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 29 H 0.05 1.36 6.92 -2.39 -0.02 1.34 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -64.09 252.49 3.23 -60.87 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.35 Total: 24.03 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 2.30 Total: -32.74 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -1.46 Total: -101.42 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -64.09 3.23 -60.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712431205.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.466 kcal (2) G-P(sol) polarization free energy of solvation -64.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds