Wall clock time and date at job start Mon Mar 30 2020 02:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09002 * 113.19094 * 25.32801 * 10 9 7 12 12 C 1.55704 * 114.08021 * 252.67760 * 10 9 7 13 13 C 1.50533 * 84.02901 * 209.82327 * 12 10 9 14 14 H 1.09005 * 112.48557 * 282.91393 * 13 12 10 15 15 C 1.51391 * 125.42309 * 141.17577 * 13 12 10 16 16 C 1.54066 * 106.08866 * 200.05077 * 15 13 12 17 17 C 1.52343 * 112.60331 * 56.02964 * 16 15 13 18 18 C 1.53501 * 111.62881 * 306.38028 * 17 16 15 19 19 C 1.50312 * 114.08381 * 157.98709 * 10 9 7 20 20 H 1.08999 * 112.91545 * 36.46345 * 19 10 9 21 21 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 22 22 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 23 23 H 1.09004 * 114.08017 * 323.53244 * 12 10 9 24 24 H 1.08999 * 114.08772 * 95.95163 * 12 10 9 25 25 H 1.09003 * 110.12187 * 319.19440 * 15 13 12 26 26 H 1.09004 * 110.12421 * 80.78663 * 15 13 12 27 27 H 1.08999 * 108.85716 * 176.83755 * 16 15 13 28 28 H 1.08999 * 108.85349 * 295.32958 * 16 15 13 29 29 H 1.08995 * 108.89657 * 67.53028 * 17 16 15 30 30 H 1.08996 * 108.90141 * 186.04209 * 17 16 15 31 31 H 1.09006 * 110.43533 * 299.03468 * 18 17 16 32 32 H 1.08998 * 109.63091 * 177.31050 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5428 -3.2952 -0.4280 12 6 4.7959 -2.8095 1.3583 13 6 5.7994 -3.5257 0.4944 14 1 5.4296 -4.4858 0.1345 15 6 7.2952 -3.5534 0.7259 16 6 7.9291 -3.9383 -0.6245 17 6 7.5211 -2.9986 -1.7520 18 6 5.9949 -2.8742 -1.8605 19 6 5.5209 -2.3656 -0.5127 20 1 6.0081 -1.4331 -0.2279 21 1 -0.4850 0.8401 0.0004 22 1 3.8646 -0.3620 0.0007 23 1 5.1990 -1.9426 1.8819 24 1 4.2092 -3.4667 2.0002 25 1 7.6448 -2.5690 1.0373 26 1 7.5437 -4.2961 1.4841 27 1 9.0142 -3.9168 -0.5232 28 1 7.6200 -4.9511 -0.8828 29 1 7.9559 -2.0163 -1.5675 30 1 7.9126 -3.3850 -2.6929 31 1 5.5483 -3.8452 -2.0749 32 1 5.7405 -2.1599 -2.6434 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712492027.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:12 Heat of formation + Delta-G solvation = 30.684676 kcal Electronic energy + Delta-G solvation = -12576.188999 eV Core-core repulsion = 10537.481670 eV Total energy + Delta-G solvation = -2038.707330 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.25226 -35.13056 -33.02038 -30.86233 -30.18731 -25.94385 -24.30039 -22.24611 -20.61993 -19.86544 -19.66565 -17.43987 -15.06869 -14.85428 -14.47239 -14.07277 -13.67577 -13.17196 -12.68450 -12.29783 -12.19892 -11.69254 -11.54431 -11.25378 -11.13692 -10.76264 -10.74273 -10.54017 -10.38083 -10.11578 -9.66544 -9.46160 -9.00876 -8.73626 -7.20551 -5.74935 -3.09396 3.39401 3.42640 3.46831 4.56660 4.61243 4.87201 4.97328 5.26634 5.31308 5.40317 5.52389 5.62542 5.65085 5.69696 5.86403 5.88646 6.00989 6.09402 6.13393 6.20795 6.27404 6.28904 6.38223 6.52168 6.55157 6.68305 6.89705 7.08561 8.02332 8.45340 9.23507 9.96459 10.17327 11.43553 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057356 B = 0.009262 C = 0.008892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.061908 B = 3022.330034 C = 3148.220498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.737 5.737 10 C 0.186 3.814 11 H 0.086 0.914 12 C -0.154 4.154 13 C -0.130 4.130 14 H 0.082 0.918 15 C -0.100 4.100 16 C -0.114 4.114 17 C -0.115 4.115 18 C -0.103 4.103 19 C -0.135 4.135 20 H 0.081 0.919 21 H 0.259 0.741 22 H 0.362 0.638 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.286 -6.402 -1.009 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.376 5.376 10 C 0.075 3.925 11 H 0.104 0.896 12 C -0.195 4.195 13 C -0.149 4.149 14 H 0.100 0.900 15 C -0.137 4.137 16 C -0.152 4.152 17 C -0.153 4.153 18 C -0.140 4.140 19 C -0.155 4.155 20 H 0.099 0.901 21 H 0.069 0.931 22 H 0.194 0.806 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.019 -6.445 -1.047 16.377 hybrid contribution 0.639 1.247 0.030 1.402 sum 15.658 -5.198 -1.017 16.529 Atomic orbital electron populations 1.69707 1.05105 1.25782 1.57651 1.24687 0.95251 0.97212 1.02083 0.86551 0.79246 0.85016 0.77777 1.21098 1.20306 1.21746 1.19158 0.80797 0.94751 1.42763 0.89150 1.42794 1.04047 1.02155 1.88625 1.21344 0.88764 0.89779 0.92591 0.89592 1.23416 0.97541 0.99431 0.99081 1.22290 0.94149 0.98056 1.00449 0.89960 1.21266 0.95228 1.01003 0.96220 1.21499 0.99312 0.99391 0.95002 1.21425 0.96524 0.99576 0.97748 1.21268 0.94414 1.00756 0.97568 1.23143 0.99516 0.97916 0.94890 0.90054 0.93100 0.80553 0.90786 0.92381 0.92192 0.92541 0.92842 0.92547 0.92548 0.92696 0.91875 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.70 13.97 55.49 0.78 -28.93 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 22.46 27.74 -169.99 -4.71 17.74 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 6 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 7 C -0.24 -7.02 10.46 -15.06 -0.16 -7.17 16 8 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 9 N -0.74 -17.87 5.25 -56.99 -0.30 -18.17 16 10 C 0.19 3.67 4.27 -71.55 -0.31 3.36 16 11 H 0.09 1.73 8.10 -51.93 -0.42 1.30 16 12 C -0.15 -2.64 7.80 -29.57 -0.23 -2.87 16 13 C -0.13 -1.89 3.04 -94.70 -0.29 -2.18 16 14 H 0.08 1.16 7.96 -51.93 -0.41 0.75 16 15 C -0.10 -1.22 6.12 -26.99 -0.17 -1.39 16 16 C -0.11 -1.27 5.77 -26.51 -0.15 -1.43 16 17 C -0.12 -1.37 5.80 -26.81 -0.16 -1.53 16 18 C -0.10 -1.46 6.04 -27.15 -0.16 -1.62 16 19 C -0.13 -2.18 2.87 -94.02 -0.27 -2.45 16 20 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 21 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 22 H 0.36 8.64 5.78 -40.82 -0.24 8.40 16 23 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.87 7.98 -51.93 -0.41 0.45 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 252.84 15.07 3.81 3.81 Total: -1.00 -30.42 252.84 -7.71 -38.13 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.30 Total: 4.68 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -1.99 Total: -17.28 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.48 Total: -47.10 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.74 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.42 -7.71 -38.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712492027.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.819 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds