Wall clock time and date at job start Mon Mar 30 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09002 * 113.19094 * 25.32801 * 10 9 7 12 12 C 1.55704 * 114.08021 * 252.67760 * 10 9 7 13 13 C 1.50533 * 84.02901 * 209.82327 * 12 10 9 14 14 H 1.09005 * 112.48557 * 282.91393 * 13 12 10 15 15 C 1.51391 * 125.42309 * 141.17577 * 13 12 10 16 16 C 1.54066 * 106.08866 * 200.05077 * 15 13 12 17 17 C 1.52343 * 112.60331 * 56.02964 * 16 15 13 18 18 C 1.53501 * 111.62881 * 306.38028 * 17 16 15 19 19 C 1.50312 * 114.08381 * 157.98709 * 10 9 7 20 20 H 1.08999 * 112.91545 * 36.46345 * 19 10 9 21 21 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 22 22 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 23 23 H 1.09004 * 114.08017 * 323.53244 * 12 10 9 24 24 H 1.08999 * 114.08772 * 95.95163 * 12 10 9 25 25 H 1.09003 * 110.12187 * 319.19440 * 15 13 12 26 26 H 1.09004 * 110.12421 * 80.78663 * 15 13 12 27 27 H 1.08999 * 108.85716 * 176.83755 * 16 15 13 28 28 H 1.08999 * 108.85349 * 295.32958 * 16 15 13 29 29 H 1.08995 * 108.89657 * 67.53028 * 17 16 15 30 30 H 1.08996 * 108.90141 * 186.04209 * 17 16 15 31 31 H 1.09006 * 110.43533 * 299.03468 * 18 17 16 32 32 H 1.08998 * 109.63091 * 177.31050 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5428 -3.2952 -0.4280 12 6 4.7959 -2.8095 1.3583 13 6 5.7994 -3.5257 0.4944 14 1 5.4296 -4.4858 0.1345 15 6 7.2952 -3.5534 0.7259 16 6 7.9291 -3.9383 -0.6245 17 6 7.5211 -2.9986 -1.7520 18 6 5.9949 -2.8742 -1.8605 19 6 5.5209 -2.3656 -0.5127 20 1 6.0081 -1.4331 -0.2279 21 1 -0.4850 0.8401 0.0004 22 1 3.8646 -0.3620 0.0007 23 1 5.1990 -1.9426 1.8819 24 1 4.2092 -3.4667 2.0002 25 1 7.6448 -2.5690 1.0373 26 1 7.5437 -4.2961 1.4841 27 1 9.0142 -3.9168 -0.5232 28 1 7.6200 -4.9511 -0.8828 29 1 7.9559 -2.0163 -1.5675 30 1 7.9126 -3.3850 -2.6929 31 1 5.5483 -3.8452 -2.0749 32 1 5.7405 -2.1599 -2.6434 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712492027.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:11 Heat of formation + Delta-G solvation = 12.129664 kcal Electronic energy + Delta-G solvation = -12576.993605 eV Core-core repulsion = 10537.481670 eV Total energy + Delta-G solvation = -2039.511935 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.54491 -36.61576 -34.78625 -32.65945 -31.51724 -27.21347 -26.03479 -23.81142 -21.91144 -21.26570 -20.84608 -19.49259 -16.76734 -16.26385 -15.76360 -15.55500 -14.89978 -14.72118 -14.38131 -13.88264 -13.55708 -13.20771 -13.00904 -12.67102 -12.46644 -12.27732 -12.19784 -11.87090 -11.83555 -11.72820 -11.35367 -10.98388 -10.74481 -10.11731 -9.25036 -8.03486 -5.35757 1.35973 1.39416 1.46834 2.47317 3.25679 3.37447 3.64299 3.89158 3.94320 4.18088 4.20139 4.28218 4.50936 4.57195 4.68205 4.81148 4.83738 4.89829 4.96825 5.12223 5.17542 5.20926 5.32410 5.34561 5.44694 5.46444 5.60838 5.73578 5.77488 6.22395 7.06847 7.84739 8.04552 9.18307 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057356 B = 0.009262 C = 0.008892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.061908 B = 3022.330034 C = 3148.220498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.254 1.254 6 H -0.294 1.294 7 C -0.233 4.233 8 H 0.056 0.944 9 N -0.743 5.743 10 C 0.160 3.840 11 H 0.073 0.927 12 C -0.148 4.148 13 C -0.111 4.111 14 H 0.087 0.913 15 C -0.097 4.097 16 C -0.112 4.112 17 C -0.111 4.111 18 C -0.104 4.104 19 C -0.131 4.131 20 H 0.080 0.920 21 H 0.258 0.742 22 H 0.365 0.635 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.356 -6.511 -1.075 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.783 3.217 4 H -0.204 1.204 5 H -0.178 1.178 6 H -0.221 1.221 7 C -0.365 4.365 8 H 0.074 0.926 9 N -0.384 5.384 10 C 0.052 3.948 11 H 0.091 0.909 12 C -0.189 4.189 13 C -0.130 4.130 14 H 0.105 0.895 15 C -0.135 4.135 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.141 4.141 19 C -0.151 4.151 20 H 0.098 0.902 21 H 0.066 0.934 22 H 0.198 0.802 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.153 -6.598 -1.111 19.347 hybrid contribution -0.353 1.156 0.053 1.210 sum 17.800 -5.442 -1.059 18.644 Atomic orbital electron populations 1.69891 1.07114 1.26652 1.59900 1.25525 0.96157 1.01277 1.02788 0.85388 0.78568 0.79618 0.78094 1.20417 1.17849 1.22112 1.19132 0.82887 0.93466 1.40966 0.92584 1.42805 1.02425 1.04009 1.89112 1.21755 0.90135 0.87721 0.95235 0.90871 1.23285 0.98047 0.99799 0.97748 1.22181 0.95523 0.97260 0.98033 0.89452 1.21286 0.92911 1.01665 0.97608 1.21491 1.00467 0.99348 0.93660 1.21399 0.94252 1.00128 0.99113 1.21305 0.96484 1.00438 0.95894 1.22970 0.96271 0.98788 0.97067 0.90215 0.93357 0.80187 0.90769 0.92807 0.92201 0.90992 0.90799 0.91887 0.92459 0.91025 0.91648 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.45 13.97 21.65 0.30 -64.15 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.96 46.64 27.74 68.60 1.90 48.54 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.25 -11.26 6.52 99.48 0.65 -10.61 16 6 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 7 C -0.23 -13.72 10.46 84.03 0.88 -12.84 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 9 N -0.74 -35.99 5.25 -334.23 -1.75 -37.75 16 10 C 0.16 6.27 4.27 42.65 0.18 6.45 16 11 H 0.07 3.00 8.10 -2.39 -0.02 2.99 16 12 C -0.15 -4.92 7.80 28.75 0.22 -4.70 16 13 C -0.11 -2.95 3.04 -13.44 -0.04 -2.99 16 14 H 0.09 2.26 7.96 -2.38 -0.02 2.24 16 15 C -0.10 -2.02 6.12 30.43 0.19 -1.84 16 16 C -0.11 -2.02 5.77 30.74 0.18 -1.84 16 17 C -0.11 -2.26 5.80 30.55 0.18 -2.08 16 18 C -0.10 -2.72 6.04 30.32 0.18 -2.54 16 19 C -0.13 -4.03 2.87 -12.99 -0.04 -4.06 16 20 H 0.08 2.50 8.08 -2.39 -0.02 2.48 16 21 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 22 H 0.36 16.99 5.78 -92.71 -0.54 16.45 16 23 H 0.07 2.47 8.13 -2.38 -0.02 2.45 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.67 7.98 -2.38 -0.02 1.65 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -66.24 252.84 3.33 -62.91 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.48 Total: 20.42 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 2.40 Total: -29.98 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -1.45 Total: -101.90 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.90 Total: 48.54 kcal Total: -66.24 3.33 -62.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712492027.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.040 kcal (2) G-P(sol) polarization free energy of solvation -66.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds