Wall clock time and date at job start Mon Mar 30 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99795 * 2 1 4 4 H 1.48510 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47261 * 299.99656 * 3 2 1 6 6 H 1.48493 * 109.47295 * 59.99902 * 3 2 1 7 7 C 1.38810 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00214 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99961 * 179.97438 * 9 7 2 11 11 H 1.09008 * 113.02455 * 23.32058 * 10 9 7 12 12 C 1.53964 * 113.74952 * 251.63486 * 10 9 7 13 13 C 1.54366 * 86.77039 * 219.10582 * 12 10 9 14 14 H 1.08996 * 114.91482 * 141.45897 * 13 12 10 15 15 C 1.53008 * 111.26822 * 271.67040 * 13 12 10 16 16 C 1.52987 * 109.20479 * 144.08640 * 15 13 12 17 17 C 1.52598 * 108.82698 * 296.33021 * 16 15 13 18 18 C 1.51630 * 111.07863 * 63.69995 * 17 16 15 19 19 C 1.50508 * 114.39677 * 313.09905 * 18 17 16 20 20 H 1.09001 * 110.66568 * 162.23365 * 19 18 17 21 21 H 0.97003 * 119.99686 * 0.02562 * 1 2 3 22 22 H 0.97003 * 120.00003 * 359.97438 * 9 7 2 23 23 H 1.09001 * 113.66462 * 333.57762 * 12 10 9 24 24 H 1.09003 * 113.66343 * 104.63879 * 12 10 9 25 25 H 1.08999 * 109.51631 * 264.00420 * 15 13 12 26 26 H 1.08996 * 109.51996 * 24.11058 * 15 13 12 27 27 H 1.08999 * 109.57470 * 56.12626 * 16 15 13 28 28 H 1.08997 * 109.57673 * 176.52228 * 16 15 13 29 29 H 1.09003 * 109.15994 * 184.11312 * 17 16 15 30 30 H 1.09006 * 109.15553 * 303.33795 * 17 16 15 31 31 H 1.09003 * 108.49891 * 191.82564 * 18 17 16 32 32 H 1.08997 * 108.49897 * 74.37033 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 3.0692 -3.5653 0.3977 12 6 1.9837 -4.4157 -1.3369 13 6 1.8676 -5.7062 -0.4980 14 1 1.1791 -6.4519 -0.8954 15 6 3.2474 -6.2785 -0.1663 16 6 3.2161 -6.8857 1.2376 17 6 2.9423 -5.7756 2.2482 18 6 1.5729 -5.1631 2.0279 19 6 1.2658 -4.8267 0.5933 20 1 0.1936 -4.6924 0.4507 21 1 -0.4850 0.8401 -0.0004 22 1 0.3556 -2.3880 0.0005 23 1 1.0899 -4.1902 -1.9188 24 1 2.8996 -4.3570 -1.9249 25 1 3.5052 -7.0506 -0.8912 26 1 3.9904 -5.4820 -0.2029 27 1 2.4258 -7.6342 1.2943 28 1 4.1778 -7.3498 1.4563 29 1 2.9914 -6.1889 3.2557 30 1 3.7014 -5.0004 2.1425 31 1 1.5029 -4.2504 2.6197 32 1 0.8189 -5.8630 2.3879 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712492029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:18 Heat of formation + Delta-G solvation = 8.320777 kcal Electronic energy + Delta-G solvation = -12649.237998 eV Core-core repulsion = 10609.560897 eV Total energy + Delta-G solvation = -2039.677101 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.87585 -34.63544 -32.91249 -30.88891 -29.71074 -25.58872 -24.24201 -22.49372 -21.60028 -20.34460 -17.73673 -16.75529 -15.61631 -14.57190 -14.16733 -13.91427 -13.74753 -13.32779 -12.94309 -12.03885 -11.91634 -11.61441 -11.27682 -11.09797 -10.88970 -10.82410 -10.60024 -10.45475 -10.11711 -9.83980 -9.58692 -9.38974 -9.11299 -8.78381 -6.88938 -5.74157 -3.01919 3.44660 3.50307 3.52568 4.62462 4.93702 4.99771 5.10721 5.43629 5.45847 5.51934 5.64278 5.72864 5.79235 5.93940 5.96252 6.09364 6.13937 6.25579 6.29114 6.38290 6.47332 6.52949 6.56985 6.63832 6.73990 6.75881 7.14100 7.24858 7.73948 8.44995 9.55713 10.15891 10.50200 11.48546 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.056756 B = 0.008999 C = 0.008832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.218754 B = 3110.629610 C = 3169.508652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.714 5.714 10 C 0.172 3.828 11 H 0.075 0.925 12 C -0.167 4.167 13 C -0.106 4.106 14 H 0.066 0.934 15 C -0.101 4.101 16 C -0.115 4.115 17 C -0.114 4.114 18 C -0.102 4.102 19 C -0.116 4.116 20 H 0.076 0.924 21 H 0.254 0.746 22 H 0.384 0.616 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 -12.364 1.666 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.060 3.940 11 H 0.093 0.907 12 C -0.208 4.208 13 C -0.125 4.125 14 H 0.085 0.915 15 C -0.138 4.138 16 C -0.152 4.152 17 C -0.152 4.152 18 C -0.139 4.139 19 C -0.136 4.136 20 H 0.094 0.906 21 H 0.064 0.936 22 H 0.218 0.782 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.989 -12.167 1.689 13.258 hybrid contribution -0.003 0.950 -0.080 0.953 sum 4.986 -11.217 1.609 12.380 Atomic orbital electron populations 1.69676 1.05108 1.25483 1.57949 1.24755 0.95519 0.97712 1.03146 0.86133 0.78813 0.84218 0.77158 1.20553 1.21904 1.21905 1.19355 0.91068 0.84297 1.42254 0.91143 1.42443 1.05719 1.00003 1.86960 1.21580 0.95158 0.84649 0.92605 0.90716 1.24042 1.00992 0.96156 0.99596 1.22067 0.96251 0.95968 0.98183 0.91522 1.21381 0.96619 0.99721 0.96076 1.21377 1.00627 0.97796 0.95434 1.21131 0.98063 0.97909 0.98085 1.20504 0.96100 1.00321 0.96997 1.22189 1.00388 0.97915 0.93116 0.90582 0.93599 0.78218 0.90869 0.92788 0.92560 0.91702 0.92352 0.92622 0.92751 0.92175 0.91731 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -18.43 5.41 -52.82 -0.29 -18.71 16 10 C 0.17 3.55 3.67 -67.31 -0.25 3.30 16 11 H 0.07 1.56 7.37 -51.92 -0.38 1.18 16 12 C -0.17 -3.06 7.29 -25.57 -0.19 -3.25 16 13 C -0.11 -1.63 4.30 -90.14 -0.39 -2.02 16 14 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 15 C -0.10 -1.35 5.39 -26.73 -0.14 -1.50 16 16 C -0.11 -1.41 5.90 -26.94 -0.16 -1.57 16 17 C -0.11 -1.55 5.75 -27.63 -0.16 -1.71 16 18 C -0.10 -1.60 5.50 -28.67 -0.16 -1.76 16 19 C -0.12 -2.02 3.40 -92.04 -0.31 -2.34 16 20 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 21 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 22 H 0.38 10.52 7.88 -40.82 -0.32 10.20 16 23 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 24 H 0.05 0.95 8.02 -51.93 -0.42 0.54 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.92 7.19 -51.93 -0.37 0.55 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.87 7.94 -51.93 -0.41 0.45 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 253.76 15.07 3.82 3.82 Total: -1.00 -29.66 253.76 -8.01 -37.67 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.25 Total: 5.76 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -2.00 Total: -18.30 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.44 Total: -46.64 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.66 -8.01 -37.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712492029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.992 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds