Wall clock time and date at job start Mon Mar 30 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99795 * 2 1 4 4 H 1.48510 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47261 * 299.99656 * 3 2 1 6 6 H 1.48493 * 109.47295 * 59.99902 * 3 2 1 7 7 C 1.38810 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00214 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99961 * 179.97438 * 9 7 2 11 11 H 1.09008 * 113.02455 * 23.32058 * 10 9 7 12 12 C 1.53964 * 113.74952 * 251.63486 * 10 9 7 13 13 C 1.54366 * 86.77039 * 219.10582 * 12 10 9 14 14 H 1.08996 * 114.91482 * 141.45897 * 13 12 10 15 15 C 1.53008 * 111.26822 * 271.67040 * 13 12 10 16 16 C 1.52987 * 109.20479 * 144.08640 * 15 13 12 17 17 C 1.52598 * 108.82698 * 296.33021 * 16 15 13 18 18 C 1.51630 * 111.07863 * 63.69995 * 17 16 15 19 19 C 1.50508 * 114.39677 * 313.09905 * 18 17 16 20 20 H 1.09001 * 110.66568 * 162.23365 * 19 18 17 21 21 H 0.97003 * 119.99686 * 0.02562 * 1 2 3 22 22 H 0.97003 * 120.00003 * 359.97438 * 9 7 2 23 23 H 1.09001 * 113.66462 * 333.57762 * 12 10 9 24 24 H 1.09003 * 113.66343 * 104.63879 * 12 10 9 25 25 H 1.08999 * 109.51631 * 264.00420 * 15 13 12 26 26 H 1.08996 * 109.51996 * 24.11058 * 15 13 12 27 27 H 1.08999 * 109.57470 * 56.12626 * 16 15 13 28 28 H 1.08997 * 109.57673 * 176.52228 * 16 15 13 29 29 H 1.09003 * 109.15994 * 184.11312 * 17 16 15 30 30 H 1.09006 * 109.15553 * 303.33795 * 17 16 15 31 31 H 1.09003 * 108.49891 * 191.82564 * 18 17 16 32 32 H 1.08997 * 108.49897 * 74.37033 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 3.0692 -3.5653 0.3977 12 6 1.9837 -4.4157 -1.3369 13 6 1.8676 -5.7062 -0.4980 14 1 1.1791 -6.4519 -0.8954 15 6 3.2474 -6.2785 -0.1663 16 6 3.2161 -6.8857 1.2376 17 6 2.9423 -5.7756 2.2482 18 6 1.5729 -5.1631 2.0279 19 6 1.2658 -4.8267 0.5933 20 1 0.1936 -4.6924 0.4507 21 1 -0.4850 0.8401 -0.0004 22 1 0.3556 -2.3880 0.0005 23 1 1.0899 -4.1902 -1.9188 24 1 2.8996 -4.3570 -1.9249 25 1 3.5052 -7.0506 -0.8912 26 1 3.9904 -5.4820 -0.2029 27 1 2.4258 -7.6342 1.2943 28 1 4.1778 -7.3498 1.4563 29 1 2.9914 -6.1889 3.2557 30 1 3.7014 -5.0004 2.1425 31 1 1.5029 -4.2504 2.6197 32 1 0.8189 -5.8630 2.3879 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712492029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:18 Heat of formation + Delta-G solvation = -9.190307 kcal Electronic energy + Delta-G solvation = -12649.997336 eV Core-core repulsion = 10609.560897 eV Total energy + Delta-G solvation = -2040.436439 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.26604 -36.26991 -34.61625 -32.38536 -31.44078 -27.07720 -26.05103 -23.96549 -23.05425 -21.64000 -19.52475 -18.44227 -17.21469 -16.16903 -15.68321 -15.45579 -15.20154 -14.75467 -14.45728 -13.62924 -13.31101 -13.23454 -12.91745 -12.66933 -12.48894 -12.32916 -12.12148 -11.94819 -11.83605 -11.60893 -10.96420 -10.90380 -10.58523 -10.55869 -8.96969 -7.95946 -5.24091 1.45181 1.46229 1.56390 2.55122 3.35737 3.68889 3.71968 3.84892 4.16304 4.21771 4.26809 4.39346 4.43759 4.60931 4.65196 4.81868 4.91214 4.95381 5.05895 5.13803 5.21258 5.23114 5.33737 5.35642 5.44575 5.45781 5.58032 5.76476 5.77587 6.26868 7.31623 8.09897 8.33081 9.27823 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.056756 B = 0.008999 C = 0.008832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.218754 B = 3110.629610 C = 3169.508652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.241 4.241 8 H 0.074 0.926 9 N -0.729 5.729 10 C 0.153 3.847 11 H 0.070 0.930 12 C -0.164 4.164 13 C -0.085 4.085 14 H 0.085 0.915 15 C -0.101 4.101 16 C -0.109 4.109 17 C -0.113 4.113 18 C -0.101 4.101 19 C -0.110 4.110 20 H 0.059 0.941 21 H 0.251 0.749 22 H 0.371 0.629 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 -14.074 1.809 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.373 4.373 8 H 0.092 0.908 9 N -0.366 5.366 10 C 0.044 3.956 11 H 0.088 0.912 12 C -0.205 4.205 13 C -0.104 4.104 14 H 0.104 0.896 15 C -0.138 4.138 16 C -0.146 4.146 17 C -0.151 4.151 18 C -0.138 4.138 19 C -0.130 4.130 20 H 0.078 0.922 21 H 0.059 0.941 22 H 0.203 0.797 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.443 -13.926 1.830 15.453 hybrid contribution -0.437 1.425 -0.124 1.496 sum 6.006 -12.501 1.706 13.973 Atomic orbital electron populations 1.69834 1.06656 1.25945 1.59824 1.25592 0.96424 1.01171 1.03930 0.85071 0.78258 0.79773 0.76684 1.18978 1.22014 1.21984 1.19729 0.91428 0.85468 1.40662 0.90759 1.42638 1.05275 1.01242 1.87489 1.21920 0.95050 0.83731 0.94927 0.91155 1.23901 1.00572 0.97620 0.98412 1.22032 0.97924 0.94887 0.95523 0.89623 1.21420 0.94534 1.00065 0.97781 1.21364 1.02347 0.97244 0.93690 1.21138 0.95893 0.98135 0.99918 1.20492 0.98374 0.99772 0.95192 1.22087 0.99023 0.96838 0.95034 0.92211 0.94052 0.79708 0.92450 0.92152 0.90161 0.92799 0.91155 0.90342 0.90791 0.93519 0.94396 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.15 13.06 21.65 0.28 -60.87 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 3 Si 0.97 47.24 29.55 68.60 2.03 49.27 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.24 -13.88 9.97 84.03 0.84 -13.04 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.73 -38.68 5.41 -321.03 -1.74 -40.42 16 10 C 0.15 6.36 3.67 45.40 0.17 6.53 16 11 H 0.07 2.96 7.37 -2.38 -0.02 2.94 16 12 C -0.16 -5.93 7.29 31.35 0.23 -5.70 16 13 C -0.08 -2.43 4.30 -10.48 -0.05 -2.48 16 14 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 15 C -0.10 -2.37 5.39 30.59 0.16 -2.20 16 16 C -0.11 -2.24 5.90 30.46 0.18 -2.06 16 17 C -0.11 -2.80 5.75 30.01 0.17 -2.63 16 18 C -0.10 -3.06 5.50 29.34 0.16 -2.89 16 19 C -0.11 -3.77 3.40 -11.71 -0.04 -3.81 16 20 H 0.06 2.23 8.07 -2.39 -0.02 2.21 16 21 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 22 H 0.37 21.17 7.88 -92.71 -0.73 20.44 16 23 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.06 2.07 8.02 -2.39 -0.02 2.05 16 25 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 1.40 7.19 -2.39 -0.02 1.38 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.27 7.94 -2.38 -0.02 1.25 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -64.10 253.76 3.22 -60.88 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.35 Total: 23.64 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 2.29 Total: -32.50 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -1.45 Total: -101.29 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -64.10 3.22 -60.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712492029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.690 kcal (2) G-P(sol) polarization free energy of solvation -64.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds