Wall clock time and date at job start Mon Mar 30 2020 02:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48493 * 109.47397 * 269.99910 * 3 2 1 5 5 H 1.48510 * 109.46813 * 29.99739 * 3 2 1 6 6 H 1.48495 * 109.47179 * 149.99357 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46997 * 180.02562 * 11 10 9 13 13 H 1.09007 * 115.54599 * 330.72076 * 12 11 10 14 14 C 1.52992 * 117.50121 * 116.38995 * 12 11 10 15 15 C 1.52997 * 117.49958 * 185.01647 * 12 11 10 16 16 H 1.08998 * 117.49613 * 145.02097 * 15 12 11 17 17 C 1.52995 * 117.49964 * 359.97438 * 15 12 11 18 18 C 1.52999 * 117.50184 * 128.62376 * 17 15 12 19 19 C 1.53000 * 60.00119 * 252.50771 * 18 17 15 20 20 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 21 21 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 22 22 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 23 23 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 24 24 H 1.09000 * 109.47486 * 300.00065 * 11 10 9 25 25 H 1.09001 * 109.47362 * 60.00788 * 11 10 9 26 26 H 1.08998 * 117.50192 * 214.98153 * 14 12 11 27 27 H 1.09007 * 117.49839 * 0.02562 * 14 12 11 28 28 H 1.09001 * 115.55180 * 274.33152 * 17 15 12 29 29 H 1.09003 * 117.49381 * 359.97438 * 18 17 15 30 30 H 1.08999 * 117.50345 * 145.01992 * 18 17 15 31 31 H 1.08998 * 117.49914 * 252.50753 * 19 18 17 32 32 H 1.09002 * 117.49847 * 107.48134 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8196 -0.0001 12 6 1.8288 -6.1447 0.0005 13 1 2.8071 -6.1230 -0.4798 14 6 1.6588 -7.0581 1.2161 15 6 1.0113 -7.4325 -0.1186 16 1 1.4517 -8.2582 -0.6775 17 6 -0.5086 -7.2967 -0.2287 18 6 -1.2021 -8.0304 -1.3784 19 6 -1.0633 -6.5072 -1.4162 20 1 -0.4850 0.8401 -0.0004 21 1 0.3556 -2.3880 -0.0039 22 1 2.6848 -3.7145 -0.8894 23 1 2.6847 -3.7144 0.8906 24 1 0.4368 -4.7621 0.8896 25 1 0.4376 -4.7618 -0.8904 26 1 2.5250 -7.6375 1.5354 27 1 1.0015 -6.7151 2.0153 28 1 -1.0440 -7.2241 0.7180 29 1 -0.5753 -8.6095 -2.0566 30 1 -2.1937 -8.4408 -1.1882 31 1 -1.9636 -5.9155 -1.2508 32 1 -0.3452 -6.0845 -2.1189 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712639497.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:10 Heat of formation + Delta-G solvation = 47.285914 kcal Electronic energy + Delta-G solvation = -11940.019173 eV Core-core repulsion = 9902.031727 eV Total energy + Delta-G solvation = -2037.987446 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.83887 -35.55381 -34.37200 -31.53218 -28.52773 -24.14258 -23.51233 -22.35317 -21.51021 -20.76541 -19.02548 -16.96467 -15.57562 -15.25349 -14.59396 -14.24996 -13.72316 -13.20534 -13.06054 -12.58991 -11.70881 -11.36558 -11.21328 -11.11486 -11.06267 -10.75810 -10.66710 -10.47476 -10.28707 -9.99149 -9.70069 -9.47490 -9.20509 -8.79722 -6.84747 -5.70787 -2.98773 3.47287 3.51917 3.54023 3.72184 4.07919 4.61620 4.66845 4.90899 5.02338 5.11601 5.22344 5.43794 5.54252 5.61263 5.67688 5.69401 5.91696 5.97323 6.02810 6.14218 6.19657 6.27408 6.32867 6.41518 6.47174 6.59570 6.99235 7.02779 7.75391 8.48780 9.59376 10.19407 10.54185 11.52466 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.058843 B = 0.006752 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.728997 B = 4146.214909 C = 4473.909257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.154 3.846 11 C -0.096 4.096 12 C -0.133 4.133 13 H 0.102 0.898 14 C -0.175 4.175 15 C -0.128 4.128 16 H 0.100 0.900 17 C -0.119 4.119 18 C -0.183 4.183 19 C -0.171 4.171 20 H 0.254 0.746 21 H 0.383 0.617 22 H 0.016 0.984 23 H 0.017 0.983 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 -15.292 -0.731 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.027 3.973 11 C -0.133 4.133 12 C -0.151 4.151 13 H 0.120 0.880 14 C -0.211 4.211 15 C -0.146 4.146 16 H 0.118 0.882 17 C -0.137 4.137 18 C -0.220 4.220 19 C -0.208 4.208 20 H 0.064 0.936 21 H 0.216 0.784 22 H 0.034 0.966 23 H 0.035 0.965 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.164 -15.166 -0.716 15.184 hybrid contribution 0.179 0.913 0.019 0.931 sum 0.343 -14.253 -0.697 14.274 Atomic orbital electron populations 1.69666 1.05110 1.25534 1.58127 1.24743 0.95537 0.97668 1.03274 0.86181 0.78633 0.83859 0.77486 1.21764 1.21793 1.20789 1.19264 0.91049 0.84287 1.42219 0.91233 1.42383 1.05895 1.00129 1.89447 1.20643 0.93618 0.85543 0.97516 1.21365 0.98056 0.91615 1.02282 1.22389 0.99979 0.91325 1.01428 0.88018 1.23101 1.02652 1.03859 0.91534 1.21797 0.92196 0.99288 1.01318 0.88203 1.21643 0.93110 1.05177 0.93810 1.22973 1.01608 0.95439 1.02015 1.23002 1.03079 0.93422 1.01325 0.93587 0.78359 0.96639 0.96488 0.92069 0.91033 0.89231 0.88814 0.87987 0.89130 0.89201 0.88735 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.08 13.06 55.49 0.72 -28.35 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 3 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.61 5.60 -59.90 -0.34 -19.94 16 10 C 0.15 3.30 6.22 -4.04 -0.03 3.28 16 11 C -0.10 -1.65 4.56 -26.73 -0.12 -1.77 16 12 C -0.13 -1.87 5.72 -90.62 -0.52 -2.39 16 13 H 0.10 1.40 8.07 -51.92 -0.42 0.98 16 14 C -0.17 -2.17 9.90 -26.73 -0.26 -2.43 16 15 C -0.13 -1.57 5.87 -90.62 -0.53 -2.10 16 16 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 17 C -0.12 -1.45 5.25 -90.62 -0.48 -1.92 16 18 C -0.18 -1.96 10.25 -26.73 -0.27 -2.24 16 19 C -0.17 -2.14 8.44 -26.73 -0.23 -2.37 16 20 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 21 H 0.38 10.65 7.67 -40.82 -0.31 10.34 16 22 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 23 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 1.09 7.87 -51.93 -0.41 0.68 16 25 H 0.07 1.25 5.63 -51.93 -0.29 0.96 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.09 1.19 8.03 -51.92 -0.42 0.77 16 28 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.10 1.31 7.30 -51.93 -0.38 0.93 16 LS Contribution 267.09 15.07 4.02 4.02 Total: -1.00 -30.81 267.09 -8.45 -39.26 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.16 Total: 6.68 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.68 Total: -19.60 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.39 Total: -48.30 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.81 -8.45 -39.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712639497.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.548 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds