Wall clock time and date at job start Mon Mar 30 2020 02:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48501 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47259 * 299.99850 * 3 2 1 6 6 H 1.48495 * 109.47205 * 60.00216 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 H 1.08995 * 115.55278 * 29.32366 * 12 11 10 14 14 C 1.53007 * 117.49608 * 243.61936 * 12 11 10 15 15 C 1.53002 * 59.99905 * 252.51042 * 14 12 11 16 16 H 1.08993 * 117.51686 * 107.48520 * 15 14 12 17 17 C 1.53005 * 117.49476 * 252.51118 * 15 14 12 18 18 C 1.53005 * 117.49533 * 197.24491 * 17 15 14 19 19 C 1.53003 * 117.49518 * 128.62480 * 17 15 14 20 20 H 0.96996 * 120.00586 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 22 22 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 23 23 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 24 24 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 25 25 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 26 26 H 1.09004 * 117.49653 * 0.02562 * 14 12 11 27 27 H 1.08997 * 117.49509 * 145.01856 * 14 12 11 28 28 H 1.08997 * 115.55199 * 342.94907 * 17 15 14 29 29 H 1.08998 * 117.49706 * 359.97438 * 18 17 15 30 30 H 1.08996 * 117.49947 * 145.02154 * 18 17 15 31 31 H 1.08998 * 117.49440 * 214.97577 * 19 17 15 32 32 H 1.08995 * 117.49851 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 6 1.8290 -6.1447 -0.0005 13 1 2.8062 -6.1231 0.4818 14 6 1.6609 -7.0581 -1.2165 15 6 1.0114 -7.4325 0.1172 16 1 -0.0715 -7.3358 0.1947 17 6 1.6283 -8.5916 0.9026 18 6 0.7782 -9.2316 2.0021 19 6 1.9691 -8.3459 2.3738 20 1 -0.4851 0.8400 -0.0004 21 1 0.3556 -2.3881 0.0002 22 1 2.6849 -3.7145 0.8894 23 1 2.6848 -3.7144 -0.8906 24 1 0.4370 -4.7622 0.8886 25 1 0.4376 -4.7618 -0.8913 26 1 1.0056 -6.7148 -2.0170 27 1 2.5277 -7.6374 -1.5344 28 1 2.2913 -9.2442 0.3346 29 1 -0.2203 -8.8265 2.1661 30 1 0.8818 -10.3054 2.1575 31 1 2.8562 -8.8371 2.7737 32 1 1.7542 -7.3583 2.7820 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712639499.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:17 Heat of formation + Delta-G solvation = 27.069868 kcal Electronic energy + Delta-G solvation = -11700.113383 eV Core-core repulsion = 9661.249304 eV Total energy + Delta-G solvation = -2038.864080 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.70561 -37.19964 -35.98765 -33.50382 -30.32742 -26.09703 -24.48942 -23.38482 -23.19337 -21.54453 -20.63917 -19.15292 -16.79755 -16.54897 -16.12578 -15.61003 -15.36233 -15.20862 -14.45892 -13.91913 -13.13101 -13.00244 -12.72358 -12.46898 -12.45063 -12.28140 -12.09048 -12.06260 -11.82463 -11.54449 -11.43473 -10.97697 -10.66487 -10.25184 -9.03412 -7.97538 -5.27467 1.46537 1.48128 1.58530 2.54309 2.68886 3.11325 3.36197 3.58531 3.85883 3.96853 4.09758 4.19673 4.23413 4.36057 4.47562 4.57896 4.65260 4.76817 4.83173 4.86306 4.98194 5.06506 5.19749 5.29744 5.30964 5.34293 5.35975 5.46594 5.49203 6.25241 7.30650 8.06165 8.30202 9.26682 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.073894 B = 0.005627 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.828219 B = 4974.861584 C = 5027.713690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.750 5.750 10 C 0.155 3.845 11 C -0.082 4.082 12 C -0.145 4.145 13 H 0.104 0.896 14 C -0.164 4.164 15 C -0.118 4.118 16 H 0.100 0.900 17 C -0.128 4.128 18 C -0.172 4.172 19 C -0.184 4.184 20 H 0.253 0.747 21 H 0.373 0.627 22 H 0.018 0.982 23 H 0.019 0.981 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 -17.851 1.385 18.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.393 5.393 10 C 0.029 3.971 11 C -0.120 4.120 12 C -0.164 4.164 13 H 0.123 0.877 14 C -0.201 4.201 15 C -0.136 4.136 16 H 0.118 0.882 17 C -0.146 4.146 18 C -0.209 4.209 19 C -0.221 4.221 20 H 0.061 0.939 21 H 0.205 0.795 22 H 0.036 0.964 23 H 0.037 0.963 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.109 0.891 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.687 -17.763 1.385 18.195 hybrid contribution -0.166 1.184 0.010 1.195 sum 3.521 -16.580 1.395 17.007 Atomic orbital electron populations 1.69831 1.06753 1.26185 1.59495 1.25637 0.96472 1.01315 1.03445 0.85008 0.78179 0.79344 0.76834 1.18971 1.21754 1.21766 1.19723 0.91585 0.85449 1.41430 0.90643 1.42644 1.05686 1.01464 1.89494 1.20772 0.94177 0.84744 0.97431 1.21148 0.97267 0.92372 1.01219 1.22213 1.00539 0.89850 1.03814 0.87742 1.23217 1.03200 1.02614 0.91059 1.21883 0.97878 0.94412 0.99426 0.88227 1.21782 1.03413 0.98961 0.90454 1.23051 0.95865 0.99551 1.02422 1.23001 1.00232 1.01271 0.97546 0.93865 0.79542 0.96367 0.96261 0.92564 0.92410 0.88890 0.87456 0.86729 0.89101 0.87310 0.87763 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.19 13.06 21.65 0.28 -60.91 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 3 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 7 C -0.25 -14.63 9.99 84.03 0.84 -13.79 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.75 -40.56 5.60 -343.45 -1.92 -42.49 16 10 C 0.15 6.63 6.22 86.38 0.54 7.16 16 11 C -0.08 -2.84 5.61 30.59 0.17 -2.66 16 12 C -0.15 -3.95 5.38 -10.79 -0.06 -4.01 16 13 H 0.10 2.83 8.07 -2.39 -0.02 2.82 16 14 C -0.16 -3.75 9.90 30.60 0.30 -3.45 16 15 C -0.12 -2.70 5.59 -10.79 -0.06 -2.76 16 16 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 17 C -0.13 -2.46 5.87 -10.79 -0.06 -2.53 16 18 C -0.17 -2.96 10.25 30.60 0.31 -2.64 16 19 C -0.18 -3.51 10.18 30.60 0.31 -3.20 16 20 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 21 H 0.37 21.25 7.67 -92.71 -0.71 20.54 16 22 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 2.02 7.88 -2.39 -0.02 2.00 16 26 H 0.09 2.15 8.03 -2.38 -0.02 2.13 16 27 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.11 1.93 8.14 -2.39 -0.02 1.92 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -64.74 273.22 3.51 -61.23 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.36 Total: 24.99 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 2.76 Total: -31.95 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -1.64 Total: -103.39 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -64.74 3.51 -61.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712639499.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.295 kcal (2) G-P(sol) polarization free energy of solvation -64.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds