Wall clock time and date at job start Mon Mar 30 2020 02:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99626 * 2 1 4 4 H 1.48507 * 109.47156 * 270.00070 * 3 2 1 5 5 H 1.48492 * 109.47520 * 30.00373 * 3 2 1 6 6 H 1.48502 * 109.46853 * 150.00671 * 3 2 1 7 7 C 1.37877 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99724 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46732 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99785 * 179.97438 * 10 9 7 12 12 C 1.53784 * 113.61401 * 107.50254 * 11 10 9 13 13 C 1.53779 * 87.08045 * 89.11659 * 12 11 10 14 14 C 1.52998 * 113.61561 * 139.98260 * 13 12 11 15 15 C 1.52996 * 117.50255 * 151.12185 * 14 13 12 16 16 C 1.52994 * 60.00282 * 252.50963 * 15 14 13 17 17 C 1.53779 * 87.08402 * 25.43458 * 13 12 11 18 18 H 0.97000 * 120.00127 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47486 * 60.00249 * 9 7 2 20 20 H 1.09004 * 109.47218 * 299.99719 * 9 7 2 21 21 H 1.00896 * 111.00321 * 56.04662 * 10 9 7 22 22 H 1.09004 * 112.90923 * 336.24980 * 11 10 9 23 23 H 1.09002 * 113.61478 * 203.66624 * 12 11 10 24 24 H 1.09004 * 113.61162 * 334.56802 * 12 11 10 25 25 H 1.09006 * 113.61307 * 270.88660 * 13 12 11 26 26 H 1.09000 * 115.55177 * 296.83120 * 14 13 12 27 27 H 1.09008 * 117.50132 * 0.02562 * 15 14 13 28 28 H 1.08999 * 117.50061 * 145.01524 * 15 14 13 29 29 H 1.08990 * 117.50081 * 252.50754 * 16 15 14 30 30 H 1.09000 * 117.49749 * 107.48943 * 16 15 14 31 31 H 1.08997 * 113.61646 * 220.02209 * 17 13 12 32 32 H 1.08998 * 113.69354 * 89.12517 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5055 -4.9070 0.0001 12 6 1.5839 -5.6509 -1.3436 13 6 2.8803 -6.2933 -0.8226 14 6 3.0206 -7.7727 -1.1868 15 6 4.4366 -8.3295 -1.3476 16 6 3.5566 -8.1096 -2.5797 17 6 2.3346 -6.0572 0.5956 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 2.8406 -3.5486 0.7808 22 1 0.4955 -4.8418 0.4048 23 1 0.7737 -6.3641 -1.4958 24 1 1.7359 -4.9925 -2.1989 25 1 3.7758 -5.7141 -1.0479 26 1 2.2642 -8.4345 -0.7650 27 1 5.2683 -7.6419 -1.1935 28 1 4.6120 -9.3577 -1.0313 29 1 3.1531 -8.9932 -3.0741 30 1 3.8093 -7.2773 -3.2366 31 1 3.0926 -5.7268 1.3057 32 1 1.7296 -6.8807 0.9749 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714729390.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:42 Heat of formation + Delta-G solvation = 33.179614 kcal Electronic energy + Delta-G solvation = -11968.632901 eV Core-core repulsion = 9930.033760 eV Total energy + Delta-G solvation = -2038.599141 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.17504 -36.25363 -33.58436 -31.56207 -26.63946 -25.28273 -24.41370 -22.23586 -21.61563 -20.47004 -18.55824 -16.31047 -15.68456 -15.20677 -14.63691 -14.25315 -13.74530 -13.28612 -12.41926 -12.13290 -12.00752 -11.70832 -11.48820 -11.36214 -10.86814 -10.74314 -10.57250 -10.37268 -10.24586 -9.92206 -9.60996 -9.42375 -9.06473 -8.46168 -7.25191 -6.01495 -4.03502 3.33447 3.38969 3.42832 3.85367 4.44111 4.73321 4.91459 4.94480 5.13536 5.22011 5.32965 5.35493 5.54735 5.59666 5.66475 5.81628 5.93699 6.05882 6.14913 6.16475 6.27849 6.32004 6.59816 6.77579 6.81697 7.32683 7.45923 7.81926 8.16758 8.43328 8.65582 9.06147 9.61406 11.09696 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.070239 B = 0.006399 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.543168 B = 4374.871056 C = 4508.194514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.671 5.671 11 C 0.063 3.937 12 C -0.124 4.124 13 C -0.069 4.069 14 C -0.138 4.138 15 C -0.185 4.185 16 C -0.181 4.181 17 C -0.140 4.140 18 H 0.261 0.739 19 H 0.028 0.972 20 H -0.014 1.014 21 H 0.330 0.670 22 H 0.047 0.953 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.068 -13.791 -1.243 14.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.303 5.303 11 C -0.048 4.048 12 C -0.162 4.162 13 C -0.088 4.088 14 C -0.156 4.156 15 C -0.222 4.222 16 C -0.218 4.218 17 C -0.178 4.178 18 H 0.071 0.929 19 H 0.046 0.954 20 H 0.004 0.996 21 H 0.148 0.852 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.991 -13.643 -1.921 14.654 hybrid contribution 0.001 0.860 0.864 1.219 sum 4.992 -12.784 -1.057 13.764 Atomic orbital electron populations 1.69967 1.06094 1.26759 1.50957 1.24991 0.94870 0.99361 0.95357 0.86480 0.79670 0.83008 0.78125 1.20614 1.21304 1.19861 1.21199 0.93507 0.90303 1.50295 0.91993 1.19597 0.90582 0.87256 0.95747 1.60542 1.20737 1.00457 1.48530 1.22540 0.96197 0.90095 0.96010 1.22967 0.96336 0.98277 0.98662 1.21994 0.98812 0.91685 0.96259 1.22369 0.96474 0.97245 0.99502 1.22939 0.94605 1.01600 1.03017 1.22878 1.04662 1.03010 0.91260 1.23252 0.99526 0.98655 0.96352 0.92927 0.95405 0.99592 0.85236 0.93458 0.91068 0.90981 0.88926 0.88339 0.88904 0.89416 0.89341 0.88765 0.91731 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.82 9.32 -34.44 -0.32 -15.15 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 5.23 5.28 -4.97 -0.03 5.20 16 10 N -0.67 -14.71 6.44 -107.12 -0.69 -15.40 16 11 C 0.06 1.15 4.22 -66.90 -0.28 0.87 16 12 C -0.12 -2.02 7.44 -25.92 -0.19 -2.21 16 13 C -0.07 -0.99 3.72 -89.81 -0.33 -1.33 16 14 C -0.14 -1.66 5.41 -90.62 -0.49 -2.15 16 15 C -0.18 -1.99 10.24 -26.74 -0.27 -2.27 16 16 C -0.18 -2.01 10.25 -26.73 -0.27 -2.28 16 17 C -0.14 -2.05 7.32 -25.92 -0.19 -2.24 16 18 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 19 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 20 H -0.01 -0.39 8.13 -51.93 -0.42 -0.81 16 21 H 0.33 6.91 8.37 -39.29 -0.33 6.58 16 22 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 23 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 26 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.93 7.91 -51.93 -0.41 0.52 16 32 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 268.98 15.07 4.05 4.05 Total: -1.00 -29.68 268.98 -8.74 -38.42 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.34 Total: 2.57 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -2.48 Total: -20.05 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.05 Total: -41.89 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.68 -8.74 -38.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714729390.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.602 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds