Wall clock time and date at job start Mon Mar 30 2020 02:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99626 * 2 1 4 4 H 1.48507 * 109.47156 * 270.00070 * 3 2 1 5 5 H 1.48492 * 109.47520 * 30.00373 * 3 2 1 6 6 H 1.48502 * 109.46853 * 150.00671 * 3 2 1 7 7 C 1.37877 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99724 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46732 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99785 * 179.97438 * 10 9 7 12 12 C 1.53784 * 113.61401 * 107.50254 * 11 10 9 13 13 C 1.53779 * 87.08045 * 89.11659 * 12 11 10 14 14 C 1.52998 * 113.61561 * 139.98260 * 13 12 11 15 15 C 1.52996 * 117.50255 * 151.12185 * 14 13 12 16 16 C 1.52994 * 60.00282 * 252.50963 * 15 14 13 17 17 C 1.53779 * 87.08402 * 25.43458 * 13 12 11 18 18 H 0.97000 * 120.00127 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47486 * 60.00249 * 9 7 2 20 20 H 1.09004 * 109.47218 * 299.99719 * 9 7 2 21 21 H 1.00896 * 111.00321 * 56.04662 * 10 9 7 22 22 H 1.09004 * 112.90923 * 336.24980 * 11 10 9 23 23 H 1.09002 * 113.61478 * 203.66624 * 12 11 10 24 24 H 1.09004 * 113.61162 * 334.56802 * 12 11 10 25 25 H 1.09006 * 113.61307 * 270.88660 * 13 12 11 26 26 H 1.09000 * 115.55177 * 296.83120 * 14 13 12 27 27 H 1.09008 * 117.50132 * 0.02562 * 15 14 13 28 28 H 1.08999 * 117.50061 * 145.01524 * 15 14 13 29 29 H 1.08990 * 117.50081 * 252.50754 * 16 15 14 30 30 H 1.09000 * 117.49749 * 107.48943 * 16 15 14 31 31 H 1.08997 * 113.61646 * 220.02209 * 17 13 12 32 32 H 1.08998 * 113.69354 * 89.12517 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5055 -4.9070 0.0001 12 6 1.5839 -5.6509 -1.3436 13 6 2.8803 -6.2933 -0.8226 14 6 3.0206 -7.7727 -1.1868 15 6 4.4366 -8.3295 -1.3476 16 6 3.5566 -8.1096 -2.5797 17 6 2.3346 -6.0572 0.5956 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 2.8406 -3.5486 0.7808 22 1 0.4955 -4.8418 0.4048 23 1 0.7737 -6.3641 -1.4958 24 1 1.7359 -4.9925 -2.1989 25 1 3.7758 -5.7141 -1.0479 26 1 2.2642 -8.4345 -0.7650 27 1 5.2683 -7.6419 -1.1935 28 1 4.6120 -9.3577 -1.0313 29 1 3.1531 -8.9932 -3.0741 30 1 3.8093 -7.2773 -3.2366 31 1 3.0926 -5.7268 1.3057 32 1 1.7296 -6.8807 0.9749 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714729390.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:42 Heat of formation + Delta-G solvation = 14.915773 kcal Electronic energy + Delta-G solvation = -11969.424881 eV Core-core repulsion = 9930.033760 eV Total energy + Delta-G solvation = -2039.391121 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.44570 -37.40454 -35.54319 -33.53072 -28.63146 -26.56685 -25.86880 -23.68361 -23.07045 -21.58196 -19.95981 -18.45481 -16.89596 -16.60716 -16.44422 -15.79189 -15.20051 -14.72528 -14.32290 -13.53066 -13.50703 -13.30782 -13.03187 -12.72535 -12.54241 -12.30730 -12.07007 -11.74163 -11.61930 -11.43538 -11.31241 -10.72312 -10.62871 -10.50883 -9.10165 -8.24088 -6.36048 1.40511 1.42831 1.54101 2.39141 2.94171 3.09104 3.43716 3.78560 3.85247 3.87774 4.07038 4.23766 4.44003 4.46293 4.53429 4.79477 4.85814 4.86663 4.94055 5.09027 5.11088 5.17651 5.23205 5.31632 5.34385 5.48603 5.58864 5.66651 6.02607 6.45229 6.73479 6.88555 7.35351 8.87826 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.070239 B = 0.006399 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.543168 B = 4374.871056 C = 4508.194514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.211 3.789 10 N -0.669 5.669 11 C 0.041 3.959 12 C -0.121 4.121 13 C -0.057 4.057 14 C -0.146 4.146 15 C -0.176 4.176 16 C -0.182 4.182 17 C -0.122 4.122 18 H 0.266 0.734 19 H -0.004 1.004 20 H -0.041 1.041 21 H 0.335 0.665 22 H 0.031 0.969 23 H 0.091 0.909 24 H 0.046 0.954 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.370 -14.709 -1.097 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.084 3.916 10 N -0.300 5.300 11 C -0.070 4.070 12 C -0.160 4.160 13 C -0.076 4.076 14 C -0.164 4.164 15 C -0.213 4.213 16 C -0.219 4.219 17 C -0.160 4.160 18 H 0.074 0.926 19 H 0.014 0.986 20 H -0.023 1.023 21 H 0.154 0.846 22 H 0.050 0.950 23 H 0.109 0.891 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.130 0.870 27 H 0.107 0.893 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.307 -14.588 -1.776 15.992 hybrid contribution -0.446 1.101 0.803 1.434 sum 5.861 -13.487 -0.973 14.738 Atomic orbital electron populations 1.70100 1.07911 1.28080 1.51447 1.25994 0.95805 1.03523 0.94443 0.85285 0.78506 0.77718 0.78485 1.19843 1.20552 1.18619 1.21555 0.93831 0.91425 1.50789 0.91686 1.19212 0.90595 0.88946 0.92896 1.60417 1.19948 1.00803 1.48842 1.22748 0.95915 0.89707 0.98609 1.22979 0.98484 0.98110 0.96399 1.21809 0.96924 0.93307 0.95547 1.22286 0.98000 0.95523 1.00624 1.23014 0.93585 1.02448 1.02207 1.22946 1.04633 1.03323 0.90989 1.23194 0.98919 0.97203 0.96647 0.92558 0.98604 1.02297 0.84642 0.95044 0.89053 0.93461 0.90466 0.86966 0.89285 0.87502 0.87677 0.89779 0.91265 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.98 44.93 29.54 68.60 2.03 46.95 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -31.55 9.32 25.60 0.24 -31.31 16 8 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 9 C 0.21 11.82 5.28 85.56 0.45 12.28 16 10 N -0.67 -30.04 6.44 -492.83 -3.17 -33.21 16 11 C 0.04 1.51 4.22 45.44 0.19 1.70 16 12 C -0.12 -3.93 7.44 31.12 0.23 -3.70 16 13 C -0.06 -1.57 3.72 -10.27 -0.04 -1.61 16 14 C -0.15 -3.14 5.41 -10.79 -0.06 -3.20 16 15 C -0.18 -3.29 10.24 30.59 0.31 -2.98 16 16 C -0.18 -3.61 10.25 30.59 0.31 -3.30 16 17 C -0.12 -3.37 7.32 31.12 0.23 -3.15 16 18 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 19 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 20 H -0.04 -2.44 8.13 -2.39 -0.02 -2.46 16 21 H 0.34 14.22 8.37 -89.70 -0.75 13.47 16 22 H 0.03 1.26 7.87 -2.39 -0.02 1.24 16 23 H 0.09 2.57 8.10 -2.39 -0.02 2.55 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.08 2.36 8.13 -2.38 -0.02 2.34 16 26 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.87 7.91 -2.39 -0.02 1.86 16 32 H 0.10 2.34 8.10 -2.39 -0.02 2.32 16 Total: -1.00 -64.38 268.98 1.80 -62.58 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.33 Total: 15.89 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 2.33 Total: -34.77 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -2.89 Total: -90.66 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.38 1.80 -62.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714729390.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.501 kcal (2) G-P(sol) polarization free energy of solvation -64.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds