Wall clock time and date at job start Mon Mar 30 2020 02:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.47264 * 180.02562 * 11 10 9 13 13 C 1.46907 * 111.00002 * 180.02562 * 12 11 10 14 14 H 1.09003 * 115.54770 * 350.71619 * 13 12 11 15 15 C 1.52994 * 117.49929 * 136.39490 * 13 12 11 16 16 C 1.52990 * 60.00143 * 107.48323 * 15 13 12 17 17 C 1.52994 * 138.58807 * 130.88582 * 16 15 13 18 18 C 1.52987 * 138.59097 * 229.10351 * 16 15 13 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 21 21 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 22 22 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 23 23 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 24 24 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 25 25 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 26 26 H 1.00892 * 110.99975 * 303.95258 * 12 11 10 27 27 H 1.08998 * 117.49837 * 214.98315 * 15 13 12 28 28 H 1.09005 * 117.49723 * 359.97079 * 15 13 12 29 29 H 1.08999 * 117.50306 * 238.38997 * 17 16 15 30 30 H 1.09000 * 117.49793 * 23.40742 * 17 16 15 31 31 H 1.09000 * 117.50269 * 336.59794 * 18 16 15 32 32 H 1.09008 * 117.50012 * 121.59921 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0031 11 6 5.5515 -2.6365 -0.0089 12 7 6.0412 -4.0215 -0.0070 13 6 7.5098 -4.0607 -0.0118 14 1 8.0050 -3.1034 -0.1745 15 6 8.1929 -5.0595 0.9245 16 6 8.1811 -5.3104 -0.5846 17 6 9.1685 -5.6758 -1.6948 18 6 7.8535 -6.4456 -1.5565 19 1 -0.4850 0.8401 0.0004 20 1 3.8712 -0.6827 -0.8987 21 1 3.8785 -0.6777 0.8813 22 1 3.6619 -3.1474 0.8900 23 1 3.6545 -3.1533 -0.8899 24 1 5.9115 -2.1255 -0.9018 25 1 5.9182 -2.1199 0.8781 26 1 5.6687 -4.5357 0.7772 27 1 9.1377 -4.7594 1.3776 28 1 7.5527 -5.6872 1.5444 29 1 9.2617 -4.9851 -2.5329 30 1 10.0851 -6.1890 -1.4042 31 1 7.9051 -7.4654 -1.1751 32 1 7.0813 -6.2616 -2.3035 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715321551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:32 Heat of formation + Delta-G solvation = 43.974403 kcal Electronic energy + Delta-G solvation = -11609.822791 eV Core-core repulsion = 9571.691747 eV Total energy + Delta-G solvation = -2038.131044 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.56516 -35.67758 -33.49231 -32.02159 -30.16982 -26.23521 -22.51553 -22.27038 -21.60354 -20.12102 -18.95823 -16.71533 -15.48307 -15.30928 -15.05597 -14.78279 -14.17303 -13.48572 -12.81716 -12.45655 -12.19149 -11.69210 -11.58889 -11.54066 -11.04374 -10.80600 -10.39277 -10.17791 -9.96079 -9.90512 -9.69993 -9.49787 -9.14920 -8.51525 -8.06817 -6.01878 -3.99591 3.32275 3.39298 3.43001 3.56210 3.68947 4.19632 4.47248 4.52459 4.78779 4.98125 5.32032 5.44296 5.50562 5.55301 5.62443 5.66060 5.70434 5.77531 5.84883 5.86147 6.11676 6.17004 6.56661 6.59592 6.92912 7.23780 7.36076 7.45065 7.55703 7.82551 8.57422 9.03734 9.60739 11.11751 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.072529 B = 0.005626 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.958218 B = 4975.684281 C = 5094.963287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.058 3.942 12 N -0.659 5.659 13 C 0.078 3.922 14 H 0.108 0.892 15 C -0.155 4.155 16 C -0.224 4.224 17 C -0.134 4.134 18 C -0.122 4.122 19 H 0.262 0.738 20 H 0.011 0.989 21 H 0.014 0.986 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.027 0.973 26 H 0.342 0.658 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.238 -8.713 -0.056 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.071 4.071 12 N -0.288 5.288 13 C -0.033 4.033 14 H 0.126 0.874 15 C -0.194 4.194 16 C -0.225 4.225 17 C -0.171 4.171 18 C -0.159 4.159 19 H 0.072 0.928 20 H 0.030 0.970 21 H 0.032 0.968 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.046 0.954 26 H 0.162 0.838 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.989 -8.643 -0.732 19.075 hybrid contribution 0.555 1.133 0.900 1.549 sum 17.544 -7.510 0.168 19.084 Atomic orbital electron populations 1.69921 1.06306 1.26830 1.51350 1.25044 0.94732 0.99173 0.94628 0.86762 0.80303 0.83616 0.78490 1.20291 1.21421 1.19098 1.21155 0.89520 0.94475 1.50552 0.91022 1.19543 0.97176 0.92220 0.96141 1.21454 0.90983 0.99761 1.01627 1.22218 0.97642 0.87194 1.00005 1.60150 1.04351 1.15338 1.48966 1.22163 0.88280 0.92588 1.00279 0.87428 1.23246 1.02561 1.03114 0.90470 1.21727 1.05920 1.01688 0.93195 1.22633 0.93489 1.02614 0.98391 1.22513 0.98384 0.94726 1.00246 0.92778 0.97033 0.96797 0.92957 0.91931 0.91381 0.95449 0.83801 0.88817 0.88587 0.88817 0.89035 0.89189 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -2.03 5.41 -26.73 -0.14 -2.17 16 11 C 0.06 0.96 5.54 -3.82 -0.02 0.94 16 12 N -0.66 -9.72 6.78 -106.73 -0.72 -10.45 16 13 C 0.08 1.00 6.31 -67.71 -0.43 0.58 16 14 H 0.11 1.35 7.90 -51.93 -0.41 0.94 16 15 C -0.16 -1.68 10.23 -26.74 -0.27 -1.96 16 16 C -0.22 -2.65 5.60 -154.53 -0.87 -3.52 16 17 C -0.13 -1.35 10.53 -26.74 -0.28 -1.63 16 18 C -0.12 -1.33 10.53 -26.74 -0.28 -1.61 16 19 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 20 H 0.01 0.27 7.58 -51.93 -0.39 -0.12 16 21 H 0.01 0.33 7.19 -51.93 -0.37 -0.04 16 22 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 23 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.34 4.75 8.52 -39.30 -0.33 4.41 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.10 0.99 8.09 -51.93 -0.42 0.57 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 LS Contribution 271.13 15.07 4.09 4.09 Total: -1.00 -30.79 271.13 -8.69 -39.48 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.32 Total: 0.52 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -2.84 Total: -23.42 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.05 Total: -38.02 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.79 -8.69 -39.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715321551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.456 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds