Wall clock time and date at job start Mon Mar 30 2020 02:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.47264 * 180.02562 * 11 10 9 13 13 C 1.46907 * 111.00002 * 180.02562 * 12 11 10 14 14 H 1.09003 * 115.54770 * 350.71619 * 13 12 11 15 15 C 1.52994 * 117.49929 * 136.39490 * 13 12 11 16 16 C 1.52990 * 60.00143 * 107.48323 * 15 13 12 17 17 C 1.52994 * 138.58807 * 130.88582 * 16 15 13 18 18 C 1.52987 * 138.59097 * 229.10351 * 16 15 13 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 21 21 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 22 22 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 23 23 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 24 24 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 25 25 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 26 26 H 1.00892 * 110.99975 * 303.95258 * 12 11 10 27 27 H 1.08998 * 117.49837 * 214.98315 * 15 13 12 28 28 H 1.09005 * 117.49723 * 359.97079 * 15 13 12 29 29 H 1.08999 * 117.50306 * 238.38997 * 17 16 15 30 30 H 1.09000 * 117.49793 * 23.40742 * 17 16 15 31 31 H 1.09000 * 117.50269 * 336.59794 * 18 16 15 32 32 H 1.09008 * 117.50012 * 121.59921 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0031 11 6 5.5515 -2.6365 -0.0089 12 7 6.0412 -4.0215 -0.0070 13 6 7.5098 -4.0607 -0.0118 14 1 8.0050 -3.1034 -0.1745 15 6 8.1929 -5.0595 0.9245 16 6 8.1811 -5.3104 -0.5846 17 6 9.1685 -5.6758 -1.6948 18 6 7.8535 -6.4456 -1.5565 19 1 -0.4850 0.8401 0.0004 20 1 3.8712 -0.6827 -0.8987 21 1 3.8785 -0.6777 0.8813 22 1 3.6619 -3.1474 0.8900 23 1 3.6545 -3.1533 -0.8899 24 1 5.9115 -2.1255 -0.9018 25 1 5.9182 -2.1199 0.8781 26 1 5.6687 -4.5357 0.7772 27 1 9.1377 -4.7594 1.3776 28 1 7.5527 -5.6872 1.5444 29 1 9.2617 -4.9851 -2.5329 30 1 10.0851 -6.1890 -1.4042 31 1 7.9051 -7.4654 -1.1751 32 1 7.0813 -6.2616 -2.3035 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715321551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:32 Heat of formation + Delta-G solvation = 24.399351 kcal Electronic energy + Delta-G solvation = -11610.671629 eV Core-core repulsion = 9571.691747 eV Total energy + Delta-G solvation = -2038.979882 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.49352 -37.03918 -35.21204 -33.65851 -31.61992 -28.01591 -24.04235 -23.25792 -22.60043 -21.79668 -19.90172 -18.90544 -16.72097 -16.55111 -16.08218 -15.99166 -15.79660 -14.88242 -14.75914 -13.92177 -13.73555 -13.23061 -12.80611 -12.55357 -12.52053 -12.32373 -11.83137 -11.73397 -11.52658 -11.36637 -11.20415 -10.80775 -10.77580 -10.76543 -9.15384 -8.29555 -6.34152 1.36405 1.38324 1.50553 2.36665 2.64926 2.82461 3.05718 3.25848 3.59582 3.91117 4.08104 4.23179 4.33828 4.51108 4.64720 4.68505 4.78639 4.83827 4.85839 4.90129 4.94699 5.04543 5.05178 5.11356 5.32021 5.50433 5.59924 5.65855 6.11658 6.29212 6.42326 6.74171 7.30532 8.87596 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.072529 B = 0.005626 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.958218 B = 4975.684281 C = 5094.963287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.536 4.536 8 H 0.028 0.972 9 C -0.010 4.010 10 C -0.092 4.092 11 C 0.073 3.927 12 N -0.667 5.667 13 C 0.058 3.942 14 H 0.111 0.889 15 C -0.138 4.138 16 C -0.244 4.244 17 C -0.121 4.121 18 C -0.129 4.129 19 H 0.267 0.733 20 H 0.019 0.981 21 H 0.022 0.978 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.345 0.655 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.939 -8.195 0.204 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.574 4.574 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.130 4.130 11 C -0.056 4.056 12 N -0.297 5.297 13 C -0.052 4.052 14 H 0.129 0.871 15 C -0.176 4.176 16 C -0.245 4.245 17 C -0.158 4.158 18 C -0.166 4.166 19 H 0.075 0.925 20 H 0.037 0.963 21 H 0.040 0.960 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.056 0.944 26 H 0.165 0.835 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 19.712 -8.150 -0.472 21.336 hybrid contribution -0.351 0.860 0.802 1.228 sum 19.361 -7.290 0.330 20.691 Atomic orbital electron populations 1.70081 1.08417 1.28224 1.52705 1.26084 0.95663 1.03740 0.94009 0.85585 0.79484 0.77864 0.79257 1.19122 1.20884 1.16807 1.21523 0.92296 0.93068 1.50463 0.95321 1.19488 0.93780 0.94919 0.96603 1.21275 0.93903 0.97067 1.00735 1.21928 0.94542 0.88624 1.00523 1.60080 1.06074 1.14075 1.49470 1.22215 0.86941 0.93467 1.02617 0.87135 1.23275 1.02869 1.01532 0.89969 1.21931 1.06993 1.01305 0.94303 1.22735 0.93636 1.01923 0.97459 1.22566 0.98894 0.95265 0.99910 0.92467 0.96269 0.95951 0.93338 0.93480 0.91279 0.94436 0.83477 0.87075 0.88243 0.88626 0.87145 0.88015 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 2 C 0.00 0.09 5.47 84.66 0.46 0.55 16 3 Si 0.96 44.78 27.47 68.60 1.88 46.66 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 7 C -0.54 -31.83 9.66 25.60 0.25 -31.59 16 8 H 0.03 1.88 7.99 -2.92 -0.02 1.86 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.09 -3.68 5.41 30.59 0.17 -3.52 16 11 C 0.07 2.30 5.54 86.30 0.48 2.77 16 12 N -0.67 -18.80 6.78 -491.57 -3.33 -22.14 16 13 C 0.06 1.38 6.31 44.91 0.28 1.66 16 14 H 0.11 2.53 7.90 -2.39 -0.02 2.51 16 15 C -0.14 -2.63 10.23 30.59 0.31 -2.32 16 16 C -0.24 -5.26 5.60 -52.19 -0.29 -5.55 16 17 C -0.12 -2.12 10.53 30.59 0.32 -1.80 16 18 C -0.13 -2.62 10.53 30.59 0.32 -2.29 16 19 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 20 H 0.02 0.88 7.58 -2.39 -0.02 0.86 16 21 H 0.02 1.03 7.19 -2.39 -0.02 1.01 16 22 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 24 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.35 9.18 8.52 -89.70 -0.76 8.41 16 27 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.10 1.82 8.09 -2.38 -0.02 1.80 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -66.43 271.13 1.53 -64.90 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.26 Total: 13.78 kcal Atomic # 6 Polarization: -44.86 SS G_CDS: 2.42 Total: -42.43 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -3.03 Total: -82.90 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -66.43 1.53 -64.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715321551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.299 kcal (2) G-P(sol) polarization free energy of solvation -66.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds