Wall clock time and date at job start Mon Mar 30 2020 02:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86791 * 120.00022 * 2 1 4 4 H 1.48501 * 109.47469 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47266 * 299.99589 * 3 2 1 6 6 H 1.48503 * 109.47451 * 59.99342 * 3 2 1 7 7 C 1.37880 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99299 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00312 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47388 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47468 * 180.02562 * 10 9 7 12 12 C 1.46905 * 111.00222 * 179.97438 * 11 10 9 13 13 H 1.08998 * 115.56290 * 9.31035 * 12 11 10 14 14 C 1.53067 * 117.51272 * 223.60539 * 12 11 10 15 15 C 1.52993 * 59.98729 * 252.52208 * 14 12 11 16 16 H 1.08999 * 117.50359 * 252.50178 * 15 14 12 17 17 C 1.52999 * 117.50281 * 107.50005 * 15 14 12 18 18 C 1.53002 * 117.49968 * 111.25242 * 17 15 14 19 19 C 1.53000 * 60.02940 * 107.50530 * 18 17 15 20 20 H 0.96994 * 119.99710 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47440 * 59.99630 * 9 7 2 22 22 H 1.09005 * 109.47199 * 299.99598 * 9 7 2 23 23 H 1.08999 * 109.47600 * 59.99465 * 10 9 7 24 24 H 1.09009 * 109.47147 * 299.99961 * 10 9 7 25 25 H 1.00905 * 110.99949 * 303.95129 * 11 10 9 26 26 H 1.09008 * 117.49669 * 145.03629 * 14 12 11 27 27 H 1.09000 * 117.53603 * 359.97438 * 14 12 11 28 28 H 1.08999 * 115.55899 * 325.57048 * 17 15 14 29 29 H 1.09002 * 117.49918 * 0.02562 * 18 17 15 30 30 H 1.09002 * 117.49754 * 215.00713 * 18 17 15 31 31 H 1.09008 * 117.49673 * 107.47884 * 19 18 17 32 32 H 1.08999 * 117.49942 * 252.47315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9342 -0.0001 12 6 2.4353 -6.0759 -0.0007 13 1 3.4854 -5.8309 0.1584 14 6 2.1162 -7.2436 -0.9376 15 6 1.9240 -7.3993 0.5722 16 1 2.6376 -8.0246 1.1086 17 6 0.4891 -7.4323 1.1020 18 6 -0.0229 -8.7562 1.6731 19 6 0.2963 -7.5913 2.6122 20 1 -0.4849 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8720 -3.6044 0.8904 24 1 2.8720 -3.6044 -0.8895 25 1 0.8741 -4.9846 0.7811 26 1 2.9566 -7.7663 -1.3945 27 1 1.2203 -7.1653 -1.5534 28 1 -0.2244 -6.8056 0.5669 29 1 0.6627 -9.6036 1.6717 30 1 -1.0731 -9.0007 1.5133 31 1 -0.5439 -7.0691 3.0700 32 1 1.1916 -7.6725 3.2286 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716587039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:33 Heat of formation + Delta-G solvation = 34.592642 kcal Electronic energy + Delta-G solvation = -11802.595263 eV Core-core repulsion = 9764.057395 eV Total energy + Delta-G solvation = -2038.537868 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.65096 -35.86708 -33.92401 -32.16551 -28.48537 -24.07580 -23.74607 -22.33231 -21.10310 -20.52843 -19.41303 -16.33125 -15.92401 -15.47720 -14.54667 -14.29474 -13.85469 -13.38356 -12.80843 -12.21428 -11.79809 -11.56485 -11.29892 -11.21648 -11.07289 -10.90779 -10.71409 -10.49078 -10.21563 -9.81923 -9.51152 -9.20198 -9.07245 -8.34136 -7.67892 -5.98777 -4.01186 3.32147 3.39380 3.43594 3.60023 4.31717 4.42441 4.54778 4.70477 4.92443 5.09704 5.33202 5.37335 5.37860 5.46253 5.62395 5.64992 5.88206 5.93203 6.07671 6.12406 6.29940 6.36101 6.42811 6.49156 6.99614 7.53586 7.74872 7.84812 7.98085 8.09991 8.44959 9.06272 9.62579 11.12849 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.060576 B = 0.006244 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.121218 B = 4482.900715 C = 4730.371070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.067 3.933 11 N -0.660 5.660 12 C 0.032 3.968 13 H 0.094 0.906 14 C -0.167 4.167 15 C -0.141 4.141 16 H 0.097 0.903 17 C -0.118 4.118 18 C -0.179 4.179 19 C -0.180 4.180 20 H 0.260 0.740 21 H 0.025 0.975 22 H 0.014 0.986 23 H 0.017 0.983 24 H 0.059 0.941 25 H 0.340 0.660 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.242 -14.515 2.552 14.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.061 4.061 11 N -0.291 5.291 12 C -0.080 4.080 13 H 0.112 0.888 14 C -0.205 4.205 15 C -0.160 4.160 16 H 0.115 0.885 17 C -0.136 4.136 18 C -0.216 4.216 19 C -0.217 4.217 20 H 0.069 0.931 21 H 0.044 0.956 22 H 0.032 0.968 23 H 0.035 0.965 24 H 0.078 0.922 25 H 0.160 0.840 26 H 0.107 0.893 27 H 0.116 0.884 28 H 0.131 0.869 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.005 -14.373 1.877 14.633 hybrid contribution 0.769 0.942 0.903 1.515 sum 2.774 -13.431 2.780 13.994 Atomic orbital electron populations 1.69988 1.06047 1.26474 1.50806 1.25008 0.94842 0.99239 0.95309 0.86525 0.80074 0.83751 0.77576 1.19762 1.20964 1.21034 1.21212 0.93034 0.90978 1.50684 0.92680 1.19079 0.94065 0.90478 0.97717 1.22210 0.97017 0.88169 0.98698 1.60341 1.18614 1.01219 1.48953 1.22489 0.95978 0.86590 1.02911 0.88808 1.23179 1.03243 1.02217 0.91866 1.22056 0.95497 1.01695 0.96766 0.88466 1.21669 0.96108 1.00222 0.95594 1.22897 1.01563 0.92257 1.04918 1.22948 1.03258 1.02605 0.92923 0.93051 0.95640 0.96803 0.96512 0.92238 0.84012 0.89311 0.88362 0.86901 0.89150 0.88988 0.88707 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.66 5.46 -17.81 -0.10 1.57 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.64 5.23 -27.89 -0.15 0.49 16 10 C 0.07 1.46 5.48 -3.83 -0.02 1.44 16 11 N -0.66 -12.27 6.46 -106.69 -0.69 -12.96 16 12 C 0.03 0.49 6.25 -67.67 -0.42 0.06 16 13 H 0.09 1.42 7.90 -51.93 -0.41 1.01 16 14 C -0.17 -2.23 10.18 -26.70 -0.27 -2.50 16 15 C -0.14 -1.81 5.85 -90.62 -0.53 -2.34 16 16 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.12 -1.48 4.80 -90.58 -0.43 -1.91 16 18 C -0.18 -1.89 10.25 -26.73 -0.27 -2.17 16 19 C -0.18 -2.04 10.26 -26.70 -0.27 -2.31 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 25 H 0.34 6.18 7.27 -39.29 -0.29 5.89 16 26 H 0.09 1.03 8.14 -51.92 -0.42 0.60 16 27 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.11 1.57 7.54 -51.93 -0.39 1.18 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.04 8.14 -51.92 -0.42 0.61 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 271.78 15.07 4.10 4.10 Total: -1.00 -29.85 271.78 -8.94 -38.80 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.28 Total: 2.72 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -2.78 Total: -22.98 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.05 Total: -39.47 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.85 -8.94 -38.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716587039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.388 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds