Wall clock time and date at job start Mon Mar 30 2020 02:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86791 * 120.00022 * 2 1 4 4 H 1.48501 * 109.47469 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47266 * 299.99589 * 3 2 1 6 6 H 1.48503 * 109.47451 * 59.99342 * 3 2 1 7 7 C 1.37880 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99299 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00312 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47388 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47468 * 180.02562 * 10 9 7 12 12 C 1.46905 * 111.00222 * 179.97438 * 11 10 9 13 13 H 1.08998 * 115.56290 * 9.31035 * 12 11 10 14 14 C 1.53067 * 117.51272 * 223.60539 * 12 11 10 15 15 C 1.52993 * 59.98729 * 252.52208 * 14 12 11 16 16 H 1.08999 * 117.50359 * 252.50178 * 15 14 12 17 17 C 1.52999 * 117.50281 * 107.50005 * 15 14 12 18 18 C 1.53002 * 117.49968 * 111.25242 * 17 15 14 19 19 C 1.53000 * 60.02940 * 107.50530 * 18 17 15 20 20 H 0.96994 * 119.99710 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47440 * 59.99630 * 9 7 2 22 22 H 1.09005 * 109.47199 * 299.99598 * 9 7 2 23 23 H 1.08999 * 109.47600 * 59.99465 * 10 9 7 24 24 H 1.09009 * 109.47147 * 299.99961 * 10 9 7 25 25 H 1.00905 * 110.99949 * 303.95129 * 11 10 9 26 26 H 1.09008 * 117.49669 * 145.03629 * 14 12 11 27 27 H 1.09000 * 117.53603 * 359.97438 * 14 12 11 28 28 H 1.08999 * 115.55899 * 325.57048 * 17 15 14 29 29 H 1.09002 * 117.49918 * 0.02562 * 18 17 15 30 30 H 1.09002 * 117.49754 * 215.00713 * 18 17 15 31 31 H 1.09008 * 117.49673 * 107.47884 * 19 18 17 32 32 H 1.08999 * 117.49942 * 252.47315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9342 -0.0001 12 6 2.4353 -6.0759 -0.0007 13 1 3.4854 -5.8309 0.1584 14 6 2.1162 -7.2436 -0.9376 15 6 1.9240 -7.3993 0.5722 16 1 2.6376 -8.0246 1.1086 17 6 0.4891 -7.4323 1.1020 18 6 -0.0229 -8.7562 1.6731 19 6 0.2963 -7.5913 2.6122 20 1 -0.4849 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8720 -3.6044 0.8904 24 1 2.8720 -3.6044 -0.8895 25 1 0.8741 -4.9846 0.7811 26 1 2.9566 -7.7663 -1.3945 27 1 1.2203 -7.1653 -1.5534 28 1 -0.2244 -6.8056 0.5669 29 1 0.6627 -9.6036 1.6717 30 1 -1.0731 -9.0007 1.5133 31 1 -0.5439 -7.0691 3.0700 32 1 1.1916 -7.6725 3.2286 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716587039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:33 Heat of formation + Delta-G solvation = 16.669216 kcal Electronic energy + Delta-G solvation = -11803.372481 eV Core-core repulsion = 9764.057395 eV Total energy + Delta-G solvation = -2039.315086 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75260 -37.10868 -35.66575 -34.04530 -30.42246 -26.11145 -24.74929 -23.20844 -22.49308 -22.22869 -20.50889 -18.49618 -17.12638 -16.69519 -16.44994 -15.87778 -15.01692 -14.73750 -14.46490 -14.04723 -13.32325 -13.07607 -12.86628 -12.51631 -12.39778 -12.23704 -12.19369 -11.96030 -11.72865 -11.40242 -11.28740 -11.03100 -10.57832 -10.27328 -9.12147 -8.21586 -6.33395 1.40268 1.40935 1.54446 2.40048 2.60249 3.11965 3.19147 3.37240 3.63340 3.96226 4.11668 4.28087 4.37365 4.42283 4.43987 4.57548 4.64056 4.81184 4.84271 5.00254 5.04141 5.06684 5.27968 5.29746 5.43745 5.44548 5.64929 5.78138 6.14254 6.30316 6.50826 6.83823 7.36145 8.91107 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.060576 B = 0.006244 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.121218 B = 4482.900715 C = 4730.371070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.031 3.969 10 C 0.087 3.913 11 N -0.667 5.667 12 C 0.002 3.998 13 H 0.099 0.901 14 C -0.159 4.159 15 C -0.118 4.118 16 H 0.119 0.881 17 C -0.141 4.141 18 C -0.160 4.160 19 C -0.182 4.182 20 H 0.264 0.736 21 H -0.007 1.007 22 H -0.009 1.009 23 H 0.020 0.980 24 H 0.058 0.942 25 H 0.339 0.661 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 -15.333 2.926 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.042 4.042 11 N -0.298 5.298 12 C -0.109 4.109 13 H 0.116 0.884 14 C -0.197 4.197 15 C -0.137 4.137 16 H 0.137 0.863 17 C -0.160 4.160 18 C -0.197 4.197 19 C -0.219 4.219 20 H 0.073 0.927 21 H 0.012 0.988 22 H 0.009 0.991 23 H 0.038 0.962 24 H 0.076 0.924 25 H 0.158 0.842 26 H 0.130 0.870 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.300 -15.218 2.249 15.733 hybrid contribution 0.313 1.135 0.788 1.417 sum 3.613 -14.083 3.036 14.852 Atomic orbital electron populations 1.70122 1.07901 1.27809 1.51476 1.26004 0.95780 1.03478 0.94525 0.85332 0.79009 0.78431 0.77848 1.18514 1.20291 1.20229 1.21633 0.93566 0.92170 1.50910 0.92074 1.18927 0.94328 0.92408 0.94985 1.21809 0.95598 0.88111 0.98707 1.60247 1.19224 1.01081 1.49215 1.22577 0.95623 0.86427 1.06242 0.88354 1.23231 1.03519 1.00634 0.92300 1.22109 0.95827 0.99278 0.96520 0.86332 1.21629 0.95776 1.02056 0.96516 1.22981 1.02354 0.91673 1.02708 1.23017 1.03623 1.03086 0.92134 0.92694 0.98830 0.99090 0.96155 0.92380 0.84155 0.86966 0.89531 0.89022 0.87606 0.88171 0.88816 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.71 5.23 29.84 0.16 1.87 16 10 C 0.09 3.81 5.48 86.30 0.47 4.29 16 11 N -0.67 -25.12 6.46 -491.45 -3.17 -28.30 16 12 C 0.00 0.05 6.25 44.94 0.28 0.34 16 13 H 0.10 2.84 7.90 -2.39 -0.02 2.82 16 14 C -0.16 -3.97 10.18 30.61 0.31 -3.66 16 15 C -0.12 -2.81 5.85 -10.80 -0.06 -2.87 16 16 H 0.12 2.35 8.14 -2.39 -0.02 2.34 16 17 C -0.14 -3.39 4.80 -10.77 -0.05 -3.44 16 18 C -0.16 -3.00 10.25 30.60 0.31 -2.68 16 19 C -0.18 -3.82 10.26 30.62 0.31 -3.50 16 20 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 21 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 22 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 23 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 25 H 0.34 12.66 7.27 -89.69 -0.65 12.01 16 26 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 28 H 0.09 2.59 7.54 -2.39 -0.02 2.57 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 31 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -64.17 271.78 1.99 -62.18 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.43 Total: 17.67 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 2.43 Total: -40.76 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -2.89 Total: -85.90 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.17 1.99 -62.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716587039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.851 kcal (2) G-P(sol) polarization free energy of solvation -64.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds