Wall clock time and date at job start Mon Mar 30 2020 02:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00231 * 2 1 4 4 H 1.48493 * 109.47391 * 269.99982 * 3 2 1 5 5 H 1.48499 * 109.46812 * 30.00244 * 3 2 1 6 6 H 1.48506 * 109.47119 * 149.99667 * 3 2 1 7 7 C 1.37878 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00220 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00152 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47235 * 180.02562 * 9 7 2 11 11 N 1.46909 * 109.47316 * 180.02562 * 10 9 7 12 12 C 1.46894 * 110.99809 * 180.02562 * 11 10 9 13 13 H 1.08993 * 115.55464 * 9.33349 * 12 11 10 14 14 C 1.53004 * 117.49354 * 223.61915 * 12 11 10 15 15 C 1.53002 * 60.00020 * 252.51541 * 14 12 11 16 16 H 1.08997 * 117.51564 * 107.48586 * 15 14 12 17 17 C 1.53006 * 117.49773 * 252.51113 * 15 14 12 18 18 C 1.53001 * 117.49866 * 197.24396 * 17 15 14 19 19 C 1.53000 * 117.49497 * 128.61987 * 17 15 14 20 20 H 0.96998 * 119.99937 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46841 * 60.00248 * 9 7 2 22 22 H 1.08995 * 109.47615 * 300.00282 * 9 7 2 23 23 H 1.09003 * 109.47055 * 60.00315 * 10 9 7 24 24 H 1.08999 * 109.47185 * 300.00127 * 10 9 7 25 25 H 1.00904 * 110.99415 * 56.04655 * 11 10 9 26 26 H 1.08999 * 117.49432 * 145.02872 * 14 12 11 27 27 H 1.08995 * 117.50018 * 0.02562 * 14 12 11 28 28 H 1.08996 * 115.55031 * 342.95882 * 17 15 14 29 29 H 1.08996 * 117.49555 * 359.97438 * 18 17 15 30 30 H 1.08995 * 117.49577 * 145.02406 * 18 17 15 31 31 H 1.08998 * 117.49694 * 214.97781 * 19 17 15 32 32 H 1.08999 * 117.50120 * 0.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 7 5.4905 -2.6368 -0.0022 12 6 6.0168 -4.0082 -0.0040 13 1 5.2794 -4.7946 -0.1644 14 6 7.1872 -4.3168 0.9320 15 6 7.4183 -4.2262 -0.5777 16 1 7.9496 -3.3521 -0.9543 17 6 7.6775 -5.5317 -1.3323 18 6 8.2988 -5.4303 -2.7269 19 6 6.8254 -5.8124 -2.5717 20 1 -0.4850 0.8400 0.0004 21 1 3.8751 -0.6806 0.8889 22 1 3.8746 -0.6801 -0.8910 23 1 3.6578 -3.1499 -0.8925 24 1 3.6584 -3.1511 0.8875 25 1 5.8520 -2.1113 0.7796 26 1 7.2197 -5.3065 1.3876 27 1 7.5663 -3.5024 1.5493 28 1 7.9630 -6.3831 -0.7145 29 1 8.5224 -4.4334 -3.1068 30 1 8.9934 -6.2149 -3.0266 31 1 6.5507 -6.8485 -2.7694 32 1 6.0804 -5.0669 -2.8497 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716587042.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:39 Heat of formation + Delta-G solvation = 37.287523 kcal Electronic energy + Delta-G solvation = -11750.188877 eV Core-core repulsion = 9711.767868 eV Total energy + Delta-G solvation = -2038.421009 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.69226 -36.10660 -33.95542 -32.19143 -29.07783 -24.28151 -23.38479 -22.45701 -21.22902 -20.51121 -19.56235 -16.80633 -15.74775 -15.45052 -14.96855 -14.28326 -13.81095 -13.43871 -12.73010 -12.46421 -12.25498 -11.70673 -11.49669 -11.34393 -11.10591 -10.92239 -10.77783 -10.31928 -10.04629 -9.83888 -9.78104 -9.43352 -9.22515 -8.53132 -7.76533 -6.04048 -4.02497 3.33418 3.40086 3.44806 3.62104 4.04602 4.39721 4.46687 4.76961 4.88266 5.00430 5.20593 5.24024 5.30551 5.44247 5.54298 5.61888 5.78653 5.88466 5.97659 6.12053 6.18132 6.20021 6.28415 6.36109 6.76555 7.14935 7.38116 7.60813 7.73986 7.89520 8.53403 8.99917 9.58282 11.09321 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.056980 B = 0.006283 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.279413 B = 4455.129097 C = 4530.873996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.011 4.011 10 C 0.075 3.925 11 N -0.665 5.665 12 C 0.040 3.960 13 H 0.107 0.893 14 C -0.203 4.203 15 C -0.120 4.120 16 H 0.106 0.894 17 C -0.122 4.122 18 C -0.178 4.178 19 C -0.177 4.177 20 H 0.263 0.737 21 H 0.013 0.987 22 H 0.021 0.979 23 H 0.065 0.935 24 H 0.025 0.975 25 H 0.337 0.663 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.343 -9.113 -1.204 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.049 4.049 10 C -0.053 4.053 11 N -0.294 5.294 12 C -0.071 4.071 13 H 0.125 0.875 14 C -0.242 4.242 15 C -0.139 4.139 16 H 0.124 0.876 17 C -0.140 4.140 18 C -0.215 4.215 19 C -0.214 4.214 20 H 0.073 0.927 21 H 0.032 0.968 22 H 0.039 0.961 23 H 0.084 0.916 24 H 0.043 0.957 25 H 0.156 0.844 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.196 -8.899 -1.886 17.711 hybrid contribution 0.195 0.610 0.899 1.103 sum 15.391 -8.290 -0.987 17.510 Atomic orbital electron populations 1.69916 1.06321 1.26930 1.51122 1.25004 0.94730 0.99208 0.94455 0.86730 0.80257 0.83413 0.78582 1.20224 1.21472 1.19025 1.21062 0.89326 0.94554 1.51047 0.91075 1.19558 0.96755 0.91817 0.96738 1.22008 0.83523 1.00101 0.99649 1.60316 1.10208 1.10238 1.48648 1.22540 0.90328 0.92367 1.01866 0.87549 1.23534 1.05201 1.02738 0.92738 1.22000 1.00920 0.96949 0.94036 0.87588 1.21722 1.04934 0.97606 0.89762 1.22953 0.96157 1.02765 0.99642 1.22984 0.94197 1.02222 1.01983 0.92713 0.96834 0.96091 0.91602 0.95705 0.84382 0.89088 0.88867 0.88095 0.88758 0.89187 0.89149 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.01 -0.27 4.30 -27.89 -0.12 -0.39 16 10 C 0.08 1.54 5.48 -3.82 -0.02 1.52 16 11 N -0.66 -11.54 6.78 -106.72 -0.72 -12.26 16 12 C 0.04 0.59 5.96 -67.71 -0.40 0.18 16 13 H 0.11 1.58 7.90 -51.93 -0.41 1.17 16 14 C -0.20 -2.46 9.95 -26.73 -0.27 -2.72 16 15 C -0.12 -1.52 5.80 -90.61 -0.53 -2.04 16 16 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 17 C -0.12 -1.35 5.87 -90.62 -0.53 -1.89 16 18 C -0.18 -1.82 10.25 -26.73 -0.27 -2.09 16 19 C -0.18 -1.96 10.18 -26.73 -0.27 -2.23 16 20 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 21 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 22 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 23 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.34 5.53 8.52 -39.29 -0.33 5.19 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 270.72 15.07 4.08 4.08 Total: -1.00 -30.21 270.72 -8.71 -38.91 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.32 Total: 2.42 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -2.84 Total: -23.19 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.05 Total: -39.65 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.21 -8.71 -38.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716587042.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.202 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds