Wall clock time and date at job start Mon Mar 30 2020 02:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00231 * 2 1 4 4 H 1.48493 * 109.47391 * 269.99982 * 3 2 1 5 5 H 1.48499 * 109.46812 * 30.00244 * 3 2 1 6 6 H 1.48506 * 109.47119 * 149.99667 * 3 2 1 7 7 C 1.37878 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00220 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00152 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47235 * 180.02562 * 9 7 2 11 11 N 1.46909 * 109.47316 * 180.02562 * 10 9 7 12 12 C 1.46894 * 110.99809 * 180.02562 * 11 10 9 13 13 H 1.08993 * 115.55464 * 9.33349 * 12 11 10 14 14 C 1.53004 * 117.49354 * 223.61915 * 12 11 10 15 15 C 1.53002 * 60.00020 * 252.51541 * 14 12 11 16 16 H 1.08997 * 117.51564 * 107.48586 * 15 14 12 17 17 C 1.53006 * 117.49773 * 252.51113 * 15 14 12 18 18 C 1.53001 * 117.49866 * 197.24396 * 17 15 14 19 19 C 1.53000 * 117.49497 * 128.61987 * 17 15 14 20 20 H 0.96998 * 119.99937 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46841 * 60.00248 * 9 7 2 22 22 H 1.08995 * 109.47615 * 300.00282 * 9 7 2 23 23 H 1.09003 * 109.47055 * 60.00315 * 10 9 7 24 24 H 1.08999 * 109.47185 * 300.00127 * 10 9 7 25 25 H 1.00904 * 110.99415 * 56.04655 * 11 10 9 26 26 H 1.08999 * 117.49432 * 145.02872 * 14 12 11 27 27 H 1.08995 * 117.50018 * 0.02562 * 14 12 11 28 28 H 1.08996 * 115.55031 * 342.95882 * 17 15 14 29 29 H 1.08996 * 117.49555 * 359.97438 * 18 17 15 30 30 H 1.08995 * 117.49577 * 145.02406 * 18 17 15 31 31 H 1.08998 * 117.49694 * 214.97781 * 19 17 15 32 32 H 1.08999 * 117.50120 * 0.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 7 5.4905 -2.6368 -0.0022 12 6 6.0168 -4.0082 -0.0040 13 1 5.2794 -4.7946 -0.1644 14 6 7.1872 -4.3168 0.9320 15 6 7.4183 -4.2262 -0.5777 16 1 7.9496 -3.3521 -0.9543 17 6 7.6775 -5.5317 -1.3323 18 6 8.2988 -5.4303 -2.7269 19 6 6.8254 -5.8124 -2.5717 20 1 -0.4850 0.8400 0.0004 21 1 3.8751 -0.6806 0.8889 22 1 3.8746 -0.6801 -0.8910 23 1 3.6578 -3.1499 -0.8925 24 1 3.6584 -3.1511 0.8875 25 1 5.8520 -2.1113 0.7796 26 1 7.2197 -5.3065 1.3876 27 1 7.5663 -3.5024 1.5493 28 1 7.9630 -6.3831 -0.7145 29 1 8.5224 -4.4334 -3.1068 30 1 8.9934 -6.2149 -3.0266 31 1 6.5507 -6.8485 -2.7694 32 1 6.0804 -5.0669 -2.8497 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716587042.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:39 Heat of formation + Delta-G solvation = 18.260570 kcal Electronic energy + Delta-G solvation = -11751.013947 eV Core-core repulsion = 9711.767868 eV Total energy + Delta-G solvation = -2039.246079 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.72519 -37.29481 -35.61239 -34.10065 -30.91308 -26.08234 -24.45563 -23.31285 -22.41177 -22.24811 -20.62293 -18.98694 -16.76361 -16.73432 -16.27810 -16.13269 -15.29520 -14.85847 -14.60921 -13.85514 -13.53975 -13.26704 -12.95694 -12.57344 -12.34795 -12.20579 -11.99246 -11.78443 -11.71554 -11.52663 -11.43987 -10.94462 -10.78023 -10.56397 -9.08863 -8.31312 -6.36313 1.37004 1.37989 1.50723 2.35822 2.65542 3.04233 3.07569 3.23791 3.78747 3.99402 4.05885 4.21635 4.24228 4.39348 4.48756 4.56898 4.61514 4.79569 4.82548 4.90742 4.93781 5.06023 5.28270 5.29674 5.31258 5.39971 5.46810 5.61220 6.15238 6.23594 6.48885 6.72065 7.28731 8.85468 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.056980 B = 0.006283 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.279413 B = 4455.129097 C = 4530.873996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.536 4.536 8 H 0.032 0.968 9 C -0.005 4.005 10 C 0.090 3.910 11 N -0.666 5.666 12 C 0.013 3.987 13 H 0.099 0.901 14 C -0.182 4.182 15 C -0.112 4.112 16 H 0.100 0.900 17 C -0.126 4.126 18 C -0.169 4.169 19 C -0.187 4.187 20 H 0.268 0.732 21 H 0.021 0.979 22 H 0.021 0.979 23 H 0.054 0.946 24 H 0.020 0.980 25 H 0.344 0.656 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.896 -8.980 -0.945 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.574 4.574 8 H 0.050 0.950 9 C -0.043 4.043 10 C -0.038 4.038 11 N -0.296 5.296 12 C -0.098 4.098 13 H 0.117 0.883 14 C -0.220 4.220 15 C -0.131 4.131 16 H 0.118 0.882 17 C -0.145 4.145 18 C -0.206 4.206 19 C -0.224 4.224 20 H 0.076 0.924 21 H 0.040 0.960 22 H 0.039 0.961 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.163 0.837 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.135 0.865 29 H 0.108 0.892 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.774 -8.789 -1.625 19.894 hybrid contribution -0.636 0.473 0.806 1.130 sum 17.138 -8.316 -0.819 19.066 Atomic orbital electron populations 1.70064 1.08317 1.28298 1.52426 1.26003 0.95628 1.03571 0.93877 0.85585 0.79410 0.77988 0.79188 1.19315 1.20774 1.17020 1.21397 0.91876 0.93279 1.50883 0.94994 1.19442 0.93654 0.94342 0.96813 1.21641 0.85869 0.97440 0.98899 1.60227 1.07764 1.12375 1.49213 1.22546 0.91256 0.90654 1.05333 0.88283 1.23602 1.02064 1.03909 0.92448 1.22013 0.98616 0.97560 0.94915 0.88236 1.21794 1.05260 0.97294 0.90109 1.23034 0.95693 1.03216 0.98611 1.22977 0.94449 1.02439 1.02492 0.92366 0.96034 0.96107 0.92779 0.96215 0.83712 0.87338 0.88032 0.86504 0.89201 0.87142 0.87800 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 2 C 0.01 0.37 5.47 84.65 0.46 0.83 16 3 Si 0.96 45.11 27.47 68.60 1.88 47.00 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 7 C -0.54 -31.70 9.66 25.60 0.25 -31.46 16 8 H 0.03 2.07 7.99 -2.91 -0.02 2.04 16 9 C 0.00 -0.23 4.30 29.85 0.13 -0.10 16 10 C 0.09 3.72 5.48 86.30 0.47 4.20 16 11 N -0.67 -22.40 6.78 -491.55 -3.33 -25.73 16 12 C 0.01 0.36 5.96 44.92 0.27 0.62 16 13 H 0.10 2.90 7.90 -2.39 -0.02 2.88 16 14 C -0.18 -3.90 9.95 30.60 0.30 -3.59 16 15 C -0.11 -2.61 5.80 -10.79 -0.06 -2.67 16 16 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 17 C -0.13 -2.51 5.87 -10.79 -0.06 -2.58 16 18 C -0.17 -3.06 10.25 30.60 0.31 -2.74 16 19 C -0.19 -3.88 10.18 30.60 0.31 -3.57 16 20 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 21 H 0.02 1.00 7.20 -2.39 -0.02 0.99 16 22 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 23 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.34 10.65 8.52 -89.69 -0.76 9.88 16 26 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.10 2.04 8.09 -2.39 -0.02 2.02 16 28 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -65.09 270.72 1.49 -63.60 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.26 Total: 16.35 kcal Atomic # 6 Polarization: -43.44 SS G_CDS: 2.38 Total: -41.06 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -3.03 Total: -85.89 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 47.00 kcal Total: -65.09 1.49 -63.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716587042.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.861 kcal (2) G-P(sol) polarization free energy of solvation -65.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds