Wall clock time and date at job start Mon Mar 30 2020 02:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99680 * 2 1 4 4 H 1.48497 * 109.46929 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47341 * 300.00246 * 3 2 1 6 6 H 1.48503 * 109.47026 * 59.99965 * 3 2 1 7 7 C 1.37872 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99877 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47169 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.46627 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99452 * 179.97438 * 11 10 9 13 13 H 1.08998 * 115.56326 * 350.69097 * 12 11 10 14 14 C 1.52999 * 117.49531 * 136.37964 * 12 11 10 15 15 C 1.53000 * 117.49504 * 205.00075 * 12 11 10 16 16 H 1.09000 * 117.52282 * 359.97438 * 15 12 11 17 17 C 1.53006 * 117.49504 * 145.02201 * 15 12 11 18 18 C 1.53001 * 117.49866 * 248.63253 * 17 15 12 19 19 C 1.53000 * 117.49497 * 180.02562 * 17 15 12 20 20 H 0.96997 * 120.00072 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47044 * 60.00049 * 9 7 2 22 22 H 1.09005 * 109.47172 * 299.99877 * 9 7 2 23 23 H 1.08998 * 109.47401 * 59.99896 * 10 9 7 24 24 H 1.09002 * 109.46753 * 299.99294 * 10 9 7 25 25 H 1.00893 * 111.00013 * 303.94934 * 11 10 9 26 26 H 1.08995 * 117.50154 * 359.97438 * 14 12 11 27 27 H 1.08998 * 117.51375 * 214.96759 * 14 12 11 28 28 H 1.08996 * 115.55031 * 34.34738 * 17 15 12 29 29 H 1.08996 * 117.49555 * 359.97438 * 18 17 15 30 30 H 1.08995 * 117.49577 * 145.02406 * 18 17 15 31 31 H 1.08998 * 117.49694 * 214.97781 * 19 17 15 32 32 H 1.08998 * 117.50118 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 7 1.5109 -4.9342 -0.0020 12 6 2.4354 -6.0759 -0.0024 13 1 3.4855 -5.8306 -0.1613 14 6 2.1165 -7.2435 0.9335 15 6 1.9242 -7.3987 -0.5765 16 1 0.9018 -7.4224 -0.9536 17 6 2.9261 -8.2760 -1.3297 18 6 2.7340 -8.4310 -2.8397 19 6 2.4147 -9.5986 -1.9044 20 1 -0.4850 0.8400 -0.0004 21 1 0.6249 -2.5563 -0.8920 22 1 0.6241 -2.5575 0.8881 23 1 2.8714 -3.6047 0.8890 24 1 2.8727 -3.6039 -0.8910 25 1 0.8742 -4.9845 0.7791 26 1 1.2209 -7.1644 1.5497 27 1 2.9565 -7.7667 1.3902 28 1 3.9482 -8.2532 -0.9518 29 1 1.8936 -7.9083 -3.2964 30 1 3.6299 -8.5099 -3.4555 31 1 3.1005 -10.4458 -1.9048 32 1 1.3646 -9.8439 -1.7454 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716587043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:42 Heat of formation + Delta-G solvation = 33.363526 kcal Electronic energy + Delta-G solvation = -11629.137596 eV Core-core repulsion = 9590.546430 eV Total energy + Delta-G solvation = -2038.591166 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.57417 -36.12508 -33.89942 -32.15104 -28.50845 -24.22375 -23.42782 -22.37289 -21.02300 -20.65843 -19.82750 -16.37752 -15.74917 -15.35124 -14.80438 -14.36426 -13.73660 -13.32578 -12.53363 -12.40566 -11.96269 -11.63901 -11.46605 -11.13530 -11.09127 -10.93699 -10.76319 -10.55210 -10.26514 -9.84769 -9.62888 -9.19784 -9.09109 -8.34681 -7.64011 -5.99269 -4.01857 3.31913 3.39144 3.43322 3.58454 4.28117 4.33806 4.49365 4.84630 4.90135 5.04940 5.24613 5.34048 5.36834 5.40034 5.56907 5.60313 5.84955 5.88572 6.02457 6.10030 6.19067 6.34414 6.41055 6.46300 6.97527 7.50809 7.73167 7.82838 7.95213 8.08560 8.43875 9.05527 9.62016 11.12313 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.072233 B = 0.005496 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.543274 B = 5093.163014 C = 5184.399308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.067 3.933 11 N -0.661 5.661 12 C 0.040 3.960 13 H 0.104 0.896 14 C -0.204 4.204 15 C -0.119 4.119 16 H 0.105 0.895 17 C -0.118 4.118 18 C -0.176 4.176 19 C -0.181 4.181 20 H 0.260 0.740 21 H 0.026 0.974 22 H 0.014 0.986 23 H 0.018 0.982 24 H 0.060 0.940 25 H 0.338 0.662 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -15.262 -1.010 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.061 4.061 11 N -0.291 5.291 12 C -0.071 4.071 13 H 0.122 0.878 14 C -0.243 4.243 15 C -0.138 4.138 16 H 0.123 0.877 17 C -0.136 4.136 18 C -0.213 4.213 19 C -0.218 4.218 20 H 0.070 0.930 21 H 0.044 0.956 22 H 0.032 0.968 23 H 0.036 0.964 24 H 0.078 0.922 25 H 0.157 0.843 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.569 -15.107 -1.691 15.874 hybrid contribution 0.722 0.918 0.913 1.482 sum 5.292 -14.190 -0.779 15.164 Atomic orbital electron populations 1.69987 1.06050 1.26493 1.50764 1.25006 0.94843 0.99248 0.95287 0.86522 0.80074 0.83736 0.77582 1.19752 1.20956 1.21029 1.21208 0.93041 0.90961 1.50746 0.92661 1.19091 0.94067 0.90482 0.97754 1.22214 0.97033 0.88019 0.98793 1.60291 1.18553 1.01444 1.48766 1.22517 0.96405 0.86456 1.01747 0.87822 1.23488 1.03295 1.04712 0.92829 1.21972 0.99134 0.98723 0.93993 0.87682 1.21685 0.98792 0.97949 0.95191 1.22919 1.03473 1.02228 0.92704 1.22919 1.01982 0.91905 1.04991 0.93038 0.95611 0.96779 0.96386 0.92176 0.84252 0.88821 0.89185 0.88189 0.88523 0.89029 0.89160 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.62 5.23 -27.88 -0.15 0.48 16 10 C 0.07 1.45 5.48 -3.82 -0.02 1.43 16 11 N -0.66 -12.28 6.78 -106.72 -0.72 -13.00 16 12 C 0.04 0.62 6.03 -67.71 -0.41 0.21 16 13 H 0.10 1.59 7.90 -51.93 -0.41 1.18 16 14 C -0.20 -2.61 9.95 -26.73 -0.27 -2.87 16 15 C -0.12 -1.59 5.78 -90.62 -0.52 -2.11 16 16 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 17 C -0.12 -1.37 5.85 -90.62 -0.53 -1.90 16 18 C -0.18 -1.92 10.25 -26.74 -0.27 -2.19 16 19 C -0.18 -1.81 10.25 -26.74 -0.27 -2.08 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 25 H 0.34 6.03 8.52 -39.30 -0.33 5.70 16 26 H 0.09 1.16 8.09 -51.93 -0.42 0.74 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 274.42 15.07 4.14 4.14 Total: -1.00 -29.90 274.42 -9.08 -38.98 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.36 Total: 2.30 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -2.85 Total: -22.75 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.01 Total: -39.46 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.90 -9.08 -38.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716587043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.347 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds