Wall clock time and date at job start Mon Mar 30 2020 02:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99680 * 2 1 4 4 H 1.48497 * 109.46929 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47341 * 300.00246 * 3 2 1 6 6 H 1.48503 * 109.47026 * 59.99965 * 3 2 1 7 7 C 1.37872 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99877 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47169 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.46627 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99452 * 179.97438 * 11 10 9 13 13 H 1.08998 * 115.56326 * 350.69097 * 12 11 10 14 14 C 1.52999 * 117.49531 * 136.37964 * 12 11 10 15 15 C 1.53000 * 117.49504 * 205.00075 * 12 11 10 16 16 H 1.09000 * 117.52282 * 359.97438 * 15 12 11 17 17 C 1.53006 * 117.49504 * 145.02201 * 15 12 11 18 18 C 1.53001 * 117.49866 * 248.63253 * 17 15 12 19 19 C 1.53000 * 117.49497 * 180.02562 * 17 15 12 20 20 H 0.96997 * 120.00072 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47044 * 60.00049 * 9 7 2 22 22 H 1.09005 * 109.47172 * 299.99877 * 9 7 2 23 23 H 1.08998 * 109.47401 * 59.99896 * 10 9 7 24 24 H 1.09002 * 109.46753 * 299.99294 * 10 9 7 25 25 H 1.00893 * 111.00013 * 303.94934 * 11 10 9 26 26 H 1.08995 * 117.50154 * 359.97438 * 14 12 11 27 27 H 1.08998 * 117.51375 * 214.96759 * 14 12 11 28 28 H 1.08996 * 115.55031 * 34.34738 * 17 15 12 29 29 H 1.08996 * 117.49555 * 359.97438 * 18 17 15 30 30 H 1.08995 * 117.49577 * 145.02406 * 18 17 15 31 31 H 1.08998 * 117.49694 * 214.97781 * 19 17 15 32 32 H 1.08998 * 117.50118 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 7 1.5109 -4.9342 -0.0020 12 6 2.4354 -6.0759 -0.0024 13 1 3.4855 -5.8306 -0.1613 14 6 2.1165 -7.2435 0.9335 15 6 1.9242 -7.3987 -0.5765 16 1 0.9018 -7.4224 -0.9536 17 6 2.9261 -8.2760 -1.3297 18 6 2.7340 -8.4310 -2.8397 19 6 2.4147 -9.5986 -1.9044 20 1 -0.4850 0.8400 -0.0004 21 1 0.6249 -2.5563 -0.8920 22 1 0.6241 -2.5575 0.8881 23 1 2.8714 -3.6047 0.8890 24 1 2.8727 -3.6039 -0.8910 25 1 0.8742 -4.9845 0.7791 26 1 1.2209 -7.1644 1.5497 27 1 2.9565 -7.7667 1.3902 28 1 3.9482 -8.2532 -0.9518 29 1 1.8936 -7.9083 -3.2964 30 1 3.6299 -8.5099 -3.4555 31 1 3.1005 -10.4458 -1.9048 32 1 1.3646 -9.8439 -1.7454 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716587043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:42 Heat of formation + Delta-G solvation = 15.274855 kcal Electronic energy + Delta-G solvation = -11629.921980 eV Core-core repulsion = 9590.546430 eV Total energy + Delta-G solvation = -2039.375550 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.65536 -37.32746 -35.66107 -34.00498 -30.42748 -26.16594 -24.48446 -23.20908 -22.54402 -22.20139 -20.89552 -18.53897 -16.89393 -16.59062 -16.39288 -16.14010 -15.02601 -14.82942 -14.21108 -13.80787 -13.45093 -13.21341 -12.89523 -12.63516 -12.39903 -12.32612 -12.07659 -12.03191 -11.72960 -11.47465 -11.28975 -11.04078 -10.57813 -10.34741 -9.05530 -8.21438 -6.33312 1.40537 1.41179 1.54673 2.39958 2.61048 3.12152 3.17773 3.29051 3.81559 3.97559 4.01801 4.20962 4.35880 4.41009 4.43489 4.57587 4.64361 4.82476 4.83255 4.92111 5.03341 5.06665 5.25476 5.30885 5.41666 5.44896 5.64774 5.77905 6.13568 6.27290 6.49674 6.83826 7.36291 8.91167 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.072233 B = 0.005496 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.543274 B = 5093.163014 C = 5184.399308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.030 3.970 10 C 0.087 3.913 11 N -0.670 5.670 12 C 0.013 3.987 13 H 0.105 0.895 14 C -0.183 4.183 15 C -0.110 4.110 16 H 0.093 0.907 17 C -0.131 4.131 18 C -0.184 4.184 19 C -0.165 4.165 20 H 0.264 0.736 21 H -0.007 1.007 22 H -0.008 1.008 23 H 0.023 0.977 24 H 0.057 0.943 25 H 0.340 0.660 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.244 -16.023 -0.818 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.041 4.041 11 N -0.300 5.300 12 C -0.098 4.098 13 H 0.123 0.877 14 C -0.221 4.221 15 C -0.130 4.130 16 H 0.112 0.888 17 C -0.149 4.149 18 C -0.221 4.221 19 C -0.202 4.202 20 H 0.073 0.927 21 H 0.012 0.988 22 H 0.011 0.989 23 H 0.041 0.959 24 H 0.076 0.924 25 H 0.159 0.841 26 H 0.115 0.885 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.012 -15.897 -1.500 17.062 hybrid contribution 0.229 1.090 0.843 1.397 sum 6.241 -14.807 -0.657 16.082 Atomic orbital electron populations 1.70120 1.07891 1.27812 1.51456 1.25997 0.95776 1.03465 0.94519 0.85336 0.79020 0.78450 0.77843 1.18508 1.20316 1.20222 1.21633 0.93581 0.92165 1.50940 0.92054 1.18944 0.94348 0.92390 0.95073 1.21804 0.95609 0.87919 0.98815 1.60208 1.19242 1.01295 1.49224 1.22563 0.95890 0.86144 1.05178 0.87729 1.23538 1.03973 1.02090 0.92546 1.21962 0.98951 0.97214 0.94866 0.88843 1.21716 0.98814 0.98963 0.95411 1.22979 1.03684 1.02944 0.92532 1.22996 1.02488 0.91689 1.03014 0.92693 0.98833 0.98920 0.95900 0.92436 0.84115 0.88454 0.87145 0.87273 0.89732 0.87813 0.87216 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -31.69 9.11 25.60 0.23 -31.45 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.64 5.23 29.85 0.16 1.80 16 10 C 0.09 3.81 5.48 86.30 0.47 4.28 16 11 N -0.67 -25.07 6.78 -491.54 -3.33 -28.40 16 12 C 0.01 0.38 6.03 44.91 0.27 0.66 16 13 H 0.10 3.09 7.90 -2.39 -0.02 3.07 16 14 C -0.18 -4.30 9.95 30.59 0.30 -4.00 16 15 C -0.11 -2.81 5.78 -10.79 -0.06 -2.87 16 16 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 17 C -0.13 -2.77 5.85 -10.79 -0.06 -2.83 16 18 C -0.18 -3.73 10.25 30.59 0.31 -3.41 16 19 C -0.16 -2.88 10.25 30.59 0.31 -2.57 16 20 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 21 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 22 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 23 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.34 12.27 8.52 -89.70 -0.76 11.50 16 26 H 0.10 2.24 8.09 -2.39 -0.02 2.22 16 27 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.11 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -64.01 274.42 1.69 -62.32 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.31 Total: 16.72 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 2.40 Total: -39.91 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -3.05 Total: -85.81 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.01 1.69 -62.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716587043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.598 kcal (2) G-P(sol) polarization free energy of solvation -64.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds