Wall clock time and date at job start Mon Mar 30 2020 03:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48504 * 109.46908 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47213 * 299.99713 * 3 2 1 6 6 H 1.48497 * 109.46915 * 59.99869 * 3 2 1 7 7 C 1.38812 * 119.99490 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99559 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00451 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00026 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46696 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46834 * 179.97438 * 11 10 9 13 13 H 1.09007 * 110.43010 * 52.46173 * 12 11 10 14 14 C 1.55238 * 110.46855 * 289.81033 * 12 11 10 15 15 C 1.54894 * 102.58338 * 203.39183 * 14 12 11 16 16 C 1.54266 * 104.31305 * 37.93170 * 15 14 12 17 17 H 1.09004 * 117.41014 * 116.29930 * 16 15 14 18 18 C 1.52998 * 118.20104 * 272.14021 * 16 15 14 19 19 C 1.53006 * 60.37534 * 93.61933 * 18 16 15 20 20 H 1.08997 * 119.75478 * 111.13075 * 19 18 16 21 21 H 0.96998 * 119.99989 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99405 * 359.97438 * 9 7 2 23 23 H 1.08996 * 109.47273 * 59.99567 * 10 9 7 24 24 H 1.08999 * 109.46493 * 299.99402 * 10 9 7 25 25 H 1.08996 * 109.47303 * 59.99965 * 11 10 9 26 26 H 1.08995 * 109.47020 * 299.99352 * 11 10 9 27 27 H 1.08996 * 110.89448 * 85.10747 * 14 12 11 28 28 H 1.08993 * 110.76342 * 321.62413 * 14 12 11 29 29 H 1.09002 * 110.48891 * 279.18596 * 15 14 12 30 30 H 1.08998 * 110.48494 * 156.67683 * 15 14 12 31 31 H 1.08994 * 117.46253 * 201.21399 * 18 16 15 32 32 H 1.08997 * 117.45883 * 346.02052 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 6 1.0636 -4.8197 0.0021 12 6 1.8285 -6.1448 0.0026 13 1 2.5577 -6.1629 0.8126 14 6 2.5269 -6.3690 -1.3656 15 6 2.6971 -7.9080 -1.4093 16 6 1.4040 -8.4531 -0.7687 17 1 0.7453 -9.0510 -1.3987 18 6 1.3690 -8.6310 0.7505 19 6 0.8517 -7.3321 0.1289 20 1 -0.2137 -7.1041 0.1605 21 1 -0.4850 0.8400 0.0004 22 1 0.3554 -2.3880 0.0005 23 1 2.6839 -3.7142 0.8921 24 1 2.6851 -3.7150 -0.8879 25 1 0.4372 -4.7626 -0.8882 26 1 0.4367 -4.7614 0.8918 27 1 3.4966 -5.8722 -1.3931 28 1 1.8930 -6.0270 -2.1836 29 1 3.5681 -8.2121 -0.8288 30 1 2.7872 -8.2526 -2.4395 31 1 0.6312 -9.3215 1.1589 32 1 2.3190 -8.5897 1.2833 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717093672.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:01 Heat of formation + Delta-G solvation = 17.300941 kcal Electronic energy + Delta-G solvation = -12018.404193 eV Core-core repulsion = 9979.116501 eV Total energy + Delta-G solvation = -2039.287692 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.52069 -35.15673 -32.70544 -30.93941 -29.62478 -26.03200 -23.34500 -22.65585 -20.92724 -20.07470 -19.33668 -17.02643 -15.67589 -15.04323 -14.51035 -14.06166 -13.30321 -13.22840 -12.97068 -12.75733 -12.34000 -11.45150 -11.29358 -11.07029 -10.88268 -10.75406 -10.61925 -10.34614 -10.13984 -10.06490 -9.86054 -9.62433 -9.50062 -8.81519 -6.85285 -5.71479 -2.99534 3.46521 3.51711 3.54340 3.68555 4.49295 4.65128 4.77465 4.87981 5.21448 5.32361 5.47825 5.54841 5.57675 5.62087 5.68255 5.75161 5.82664 6.00079 6.10031 6.12736 6.24235 6.30267 6.35646 6.45889 6.48636 6.63337 6.96757 7.01717 7.75169 8.48120 9.58714 10.18813 10.53343 11.51916 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.085841 B = 0.006254 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.106810 B = 4476.185432 C = 4630.490731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.153 3.847 11 C -0.116 4.116 12 C -0.058 4.058 13 H 0.073 0.927 14 C -0.117 4.117 15 C -0.096 4.096 16 C -0.173 4.173 17 H 0.105 0.895 18 C -0.157 4.157 19 C -0.156 4.156 20 H 0.109 0.891 21 H 0.254 0.746 22 H 0.383 0.617 23 H 0.015 0.985 24 H 0.019 0.981 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.262 -16.115 -0.999 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.026 3.974 11 C -0.154 4.154 12 C -0.077 4.077 13 H 0.091 0.909 14 C -0.155 4.155 15 C -0.134 4.134 16 C -0.191 4.191 17 H 0.123 0.877 18 C -0.193 4.193 19 C -0.174 4.174 20 H 0.127 0.873 21 H 0.064 0.936 22 H 0.216 0.784 23 H 0.033 0.967 24 H 0.036 0.964 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.412 -15.985 -1.014 16.377 hybrid contribution 0.015 0.919 0.008 0.919 sum 3.426 -15.066 -1.006 15.484 Atomic orbital electron populations 1.69675 1.05129 1.25445 1.58195 1.24746 0.95535 0.97691 1.03274 0.86110 0.78767 0.84143 0.77167 1.20573 1.21884 1.21890 1.19310 0.91074 0.84286 1.42112 0.91178 1.42408 1.05908 1.00174 1.89428 1.20664 0.93631 0.85566 0.97563 1.21721 0.98588 0.93151 1.01946 1.21605 0.95900 0.92937 0.97279 0.90869 1.22825 1.00721 0.94514 0.97416 1.21960 0.95697 0.95686 1.00012 1.23230 0.99995 1.03504 0.92339 0.87742 1.23024 1.02586 0.99249 0.94481 1.23346 0.99695 0.89431 1.04963 0.87319 0.93618 0.78368 0.96671 0.96362 0.91984 0.92015 0.91200 0.91096 0.91787 0.91630 0.88846 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.16 13.06 55.49 0.72 -28.43 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 3 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.74 -19.64 5.60 -59.91 -0.34 -19.97 16 10 C 0.15 3.25 6.14 -4.04 -0.02 3.23 16 11 C -0.12 -2.00 4.80 -26.73 -0.13 -2.13 16 12 C -0.06 -0.82 2.66 -88.77 -0.24 -1.06 16 13 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 14 C -0.12 -1.53 5.70 -24.55 -0.14 -1.67 16 15 C -0.10 -1.06 6.61 -25.07 -0.17 -1.23 16 16 C -0.17 -1.92 6.94 -89.51 -0.62 -2.54 16 17 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 18 C -0.16 -1.67 10.07 -26.73 -0.27 -1.94 16 19 C -0.16 -1.96 6.36 -89.50 -0.57 -2.53 16 20 H 0.11 1.37 8.05 -51.93 -0.42 0.95 16 21 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 22 H 0.38 10.69 7.67 -40.82 -0.31 10.37 16 23 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.02 0.39 7.56 -51.93 -0.39 0.00 16 25 H 0.06 1.09 8.02 -51.93 -0.42 0.67 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 28 H 0.07 0.97 7.97 -51.93 -0.41 0.55 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 262.91 15.07 3.96 3.96 Total: -1.00 -30.93 262.91 -8.37 -39.30 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.30 Total: 4.73 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -2.40 Total: -17.51 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.39 Total: -48.40 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.93 -8.37 -39.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717093672.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.604 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds