Wall clock time and date at job start Mon Mar 30 2020 03:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48504 * 109.46908 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47213 * 299.99713 * 3 2 1 6 6 H 1.48497 * 109.46915 * 59.99869 * 3 2 1 7 7 C 1.38812 * 119.99490 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99559 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00451 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00026 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46696 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46834 * 179.97438 * 11 10 9 13 13 H 1.09007 * 110.43010 * 52.46173 * 12 11 10 14 14 C 1.55238 * 110.46855 * 289.81033 * 12 11 10 15 15 C 1.54894 * 102.58338 * 203.39183 * 14 12 11 16 16 C 1.54266 * 104.31305 * 37.93170 * 15 14 12 17 17 H 1.09004 * 117.41014 * 116.29930 * 16 15 14 18 18 C 1.52998 * 118.20104 * 272.14021 * 16 15 14 19 19 C 1.53006 * 60.37534 * 93.61933 * 18 16 15 20 20 H 1.08997 * 119.75478 * 111.13075 * 19 18 16 21 21 H 0.96998 * 119.99989 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99405 * 359.97438 * 9 7 2 23 23 H 1.08996 * 109.47273 * 59.99567 * 10 9 7 24 24 H 1.08999 * 109.46493 * 299.99402 * 10 9 7 25 25 H 1.08996 * 109.47303 * 59.99965 * 11 10 9 26 26 H 1.08995 * 109.47020 * 299.99352 * 11 10 9 27 27 H 1.08996 * 110.89448 * 85.10747 * 14 12 11 28 28 H 1.08993 * 110.76342 * 321.62413 * 14 12 11 29 29 H 1.09002 * 110.48891 * 279.18596 * 15 14 12 30 30 H 1.08998 * 110.48494 * 156.67683 * 15 14 12 31 31 H 1.08994 * 117.46253 * 201.21399 * 18 16 15 32 32 H 1.08997 * 117.45883 * 346.02052 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 6 1.0636 -4.8197 0.0021 12 6 1.8285 -6.1448 0.0026 13 1 2.5577 -6.1629 0.8126 14 6 2.5269 -6.3690 -1.3656 15 6 2.6971 -7.9080 -1.4093 16 6 1.4040 -8.4531 -0.7687 17 1 0.7453 -9.0510 -1.3987 18 6 1.3690 -8.6310 0.7505 19 6 0.8517 -7.3321 0.1289 20 1 -0.2137 -7.1041 0.1605 21 1 -0.4850 0.8400 0.0004 22 1 0.3554 -2.3880 0.0005 23 1 2.6839 -3.7142 0.8921 24 1 2.6851 -3.7150 -0.8879 25 1 0.4372 -4.7626 -0.8882 26 1 0.4367 -4.7614 0.8918 27 1 3.4966 -5.8722 -1.3931 28 1 1.8930 -6.0270 -2.1836 29 1 3.5681 -8.2121 -0.8288 30 1 2.7872 -8.2526 -2.4395 31 1 0.6312 -9.3215 1.1589 32 1 2.3190 -8.5897 1.2833 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717093672.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:01 Heat of formation + Delta-G solvation = -0.679230 kcal Electronic energy + Delta-G solvation = -12019.183872 eV Core-core repulsion = 9979.116501 eV Total energy + Delta-G solvation = -2040.067371 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.51297 -36.98593 -34.42410 -32.45136 -31.05984 -27.66077 -25.09470 -23.88794 -22.35047 -21.14706 -20.35206 -19.15747 -16.84436 -16.50904 -16.13198 -15.49775 -15.21602 -14.99816 -14.07765 -13.77652 -13.66042 -13.07368 -12.87377 -12.74985 -12.43904 -12.11074 -11.99701 -11.92924 -11.65006 -11.47410 -11.37916 -10.94583 -10.88791 -10.45561 -9.02658 -7.97375 -5.27099 1.46290 1.47980 1.58317 2.54895 2.78735 3.36247 3.50782 3.77462 3.87373 4.14664 4.26948 4.31698 4.37487 4.44127 4.60693 4.68615 4.77129 4.81316 4.92446 4.96025 4.96928 5.13906 5.21947 5.29311 5.37497 5.37649 5.45696 5.47588 5.58830 6.25565 7.30784 8.07023 8.30719 9.26942 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.085841 B = 0.006254 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.106810 B = 4476.185432 C = 4630.490731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.076 0.924 9 N -0.750 5.750 10 C 0.153 3.847 11 C -0.103 4.103 12 C -0.054 4.054 13 H 0.073 0.927 14 C -0.120 4.120 15 C -0.092 4.092 16 C -0.167 4.167 17 H 0.117 0.883 18 C -0.144 4.144 19 C -0.178 4.178 20 H 0.104 0.896 21 H 0.252 0.748 22 H 0.373 0.627 23 H 0.016 0.984 24 H 0.022 0.978 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.314 -17.199 -1.063 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.393 5.393 10 C 0.027 3.973 11 C -0.141 4.141 12 C -0.073 4.073 13 H 0.091 0.909 14 C -0.157 4.157 15 C -0.129 4.129 16 C -0.185 4.185 17 H 0.135 0.865 18 C -0.181 4.181 19 C -0.196 4.196 20 H 0.122 0.878 21 H 0.061 0.939 22 H 0.204 0.796 23 H 0.034 0.966 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.495 -17.105 -1.078 17.718 hybrid contribution -0.306 1.211 0.030 1.249 sum 4.189 -15.894 -1.048 16.470 Atomic orbital electron populations 1.69834 1.06766 1.26165 1.59549 1.25644 0.96479 1.01342 1.03520 0.85007 0.78173 0.79350 0.76827 1.18960 1.21758 1.21787 1.19723 0.91565 0.85470 1.41331 0.90653 1.42661 1.05674 1.01494 1.89451 1.20823 0.94250 0.84872 0.97395 1.21579 0.97748 0.93521 1.01233 1.21521 0.96001 0.91732 0.98019 0.90870 1.22823 1.00186 0.96382 0.96336 1.21945 0.96075 0.93785 1.01123 1.23353 0.99806 1.02447 0.92846 0.86546 1.23127 1.03006 0.97686 0.94282 1.23254 0.99101 0.89557 1.07660 0.87809 0.93881 0.79587 0.96636 0.96021 0.92659 0.92739 0.91442 0.92056 0.90892 0.90269 0.87212 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.75 -40.61 5.60 -343.44 -1.92 -42.54 16 10 C 0.15 6.50 6.14 86.38 0.53 7.04 16 11 C -0.10 -3.56 4.80 30.60 0.15 -3.41 16 12 C -0.05 -1.46 2.66 -9.60 -0.03 -1.49 16 13 H 0.07 1.98 8.14 -2.38 -0.02 1.97 16 14 C -0.12 -2.97 5.70 32.01 0.18 -2.79 16 15 C -0.09 -1.80 6.61 31.67 0.21 -1.59 16 16 C -0.17 -3.27 6.94 -10.07 -0.07 -3.34 16 17 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 18 C -0.14 -2.70 10.07 30.60 0.31 -2.39 16 19 C -0.18 -4.18 6.36 -10.07 -0.06 -4.24 16 20 H 0.10 2.53 8.05 -2.39 -0.02 2.51 16 21 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 22 H 0.37 21.32 7.67 -92.71 -0.71 20.61 16 23 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.02 0.92 7.56 -2.39 -0.02 0.90 16 25 H 0.05 1.97 8.02 -2.39 -0.02 1.95 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.07 1.68 8.06 -2.39 -0.02 1.66 16 28 H 0.06 1.63 7.97 -2.39 -0.02 1.61 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -65.00 262.91 3.28 -61.72 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.37 Total: 22.85 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 2.52 Total: -30.12 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -1.64 Total: -103.64 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -65.00 3.28 -61.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717093672.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.045 kcal (2) G-P(sol) polarization free energy of solvation -65.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds