Wall clock time and date at job start Mon Mar 30 2020 03:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99912 * 2 1 4 4 H 1.48505 * 109.47035 * 269.99436 * 3 2 1 5 5 H 1.48498 * 109.47265 * 29.99905 * 3 2 1 6 6 H 1.48500 * 109.47134 * 149.99738 * 3 2 1 7 7 C 1.38818 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99712 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00088 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99835 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47057 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47118 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.53849 * 56.15669 * 12 11 10 14 14 C 1.54889 * 110.48592 * 293.54400 * 12 11 10 15 15 C 1.54891 * 102.74891 * 203.37985 * 14 12 11 16 16 C 1.54266 * 104.31343 * 37.87666 * 15 14 12 17 17 H 1.09000 * 117.41374 * 196.48160 * 16 15 14 18 18 C 1.55782 * 118.11191 * 39.94747 * 16 15 14 19 19 C 1.53003 * 59.86518 * 266.78956 * 18 16 15 20 20 H 1.08996 * 119.29698 * 248.36500 * 19 18 16 21 21 H 0.96996 * 120.00382 * 0.02562 * 1 2 3 22 22 H 0.97004 * 119.99821 * 0.02562 * 9 7 2 23 23 H 1.08994 * 109.47063 * 59.99841 * 10 9 7 24 24 H 1.08998 * 109.46732 * 299.99635 * 10 9 7 25 25 H 1.09001 * 109.46994 * 59.99442 * 11 10 9 26 26 H 1.09002 * 109.46915 * 299.99835 * 11 10 9 27 27 H 1.08998 * 110.75807 * 85.06488 * 14 12 11 28 28 H 1.08998 * 110.91370 * 321.76573 * 14 12 11 29 29 H 1.09002 * 110.48740 * 156.62163 * 15 14 12 30 30 H 1.08998 * 110.48604 * 279.13048 * 15 14 12 31 31 H 1.08995 * 117.11858 * 159.22272 * 18 16 15 32 32 H 1.09005 * 118.10909 * 13.90670 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8198 -0.0001 12 6 1.8289 -6.1447 -0.0008 13 1 2.5124 -6.1921 0.8470 14 6 2.6020 -6.3237 -1.3310 15 6 2.7782 -7.8600 -1.4198 16 6 1.4530 -8.4283 -0.8716 17 1 1.4401 -9.4782 -0.5790 18 6 0.1276 -7.7114 -1.2667 19 6 0.8477 -7.3347 0.0297 20 1 0.3875 -7.5813 0.9864 21 1 -0.4850 0.8400 -0.0004 22 1 0.3556 -2.3881 -0.0002 23 1 2.6848 -3.7145 0.8905 24 1 2.6847 -3.7145 -0.8895 25 1 0.4376 -4.7618 -0.8903 26 1 0.4370 -4.7622 0.8897 27 1 3.5705 -5.8258 -1.2849 28 1 2.0181 -5.9525 -2.1732 29 1 2.9260 -8.1678 -2.4550 30 1 3.6165 -8.1841 -0.8031 31 1 -0.7936 -8.2876 -1.1809 32 1 0.1571 -6.9921 -2.0853 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717093673.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:04 Heat of formation + Delta-G solvation = 1.055012 kcal Electronic energy + Delta-G solvation = -12089.558572 eV Core-core repulsion = 10049.566403 eV Total energy + Delta-G solvation = -2039.992168 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60172 -36.92864 -34.27955 -32.20291 -31.00130 -27.64449 -25.09849 -24.45522 -22.72681 -20.44671 -19.96534 -19.03431 -17.41293 -16.60982 -15.79661 -15.52055 -15.22564 -15.04641 -14.22417 -13.78059 -13.42851 -13.04981 -12.87450 -12.78215 -12.32791 -12.18068 -12.03638 -11.86681 -11.77390 -11.48259 -11.41078 -10.93226 -10.82028 -10.34573 -9.02297 -7.96967 -5.26753 1.46068 1.48839 1.57441 2.54987 2.80638 3.36274 3.55734 3.72099 3.87415 4.11057 4.22461 4.27122 4.38079 4.47652 4.60162 4.69799 4.80214 4.82355 4.91288 4.96762 5.00163 5.16648 5.26506 5.31205 5.35057 5.40023 5.43096 5.47742 5.56593 6.25709 7.30903 8.07491 8.31135 9.27064 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.080917 B = 0.006519 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.950292 B = 4293.882674 C = 4484.138129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.251 4.251 8 H 0.075 0.925 9 N -0.750 5.750 10 C 0.152 3.848 11 C -0.102 4.102 12 C -0.056 4.056 13 H 0.081 0.919 14 C -0.127 4.127 15 C -0.092 4.092 16 C -0.161 4.161 17 H 0.126 0.874 18 C -0.159 4.159 19 C -0.169 4.169 20 H 0.111 0.889 21 H 0.252 0.748 22 H 0.372 0.628 23 H 0.016 0.984 24 H 0.021 0.979 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 -16.878 -1.734 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.806 3.194 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.382 4.382 8 H 0.093 0.907 9 N -0.393 5.393 10 C 0.026 3.974 11 C -0.140 4.140 12 C -0.075 4.075 13 H 0.099 0.901 14 C -0.165 4.165 15 C -0.129 4.129 16 C -0.179 4.179 17 H 0.144 0.856 18 C -0.196 4.196 19 C -0.187 4.187 20 H 0.129 0.871 21 H 0.061 0.939 22 H 0.204 0.796 23 H 0.034 0.966 24 H 0.039 0.961 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.106 -16.786 -1.716 17.366 hybrid contribution -0.227 1.204 0.094 1.229 sum 3.879 -15.582 -1.622 16.139 Atomic orbital electron populations 1.69830 1.06755 1.26232 1.59461 1.25650 0.96481 1.01344 1.03499 0.85072 0.77670 0.79036 0.77575 1.21167 1.21920 1.19328 1.19689 0.91556 0.85503 1.41487 0.90681 1.42658 1.05660 1.01498 1.89460 1.20839 0.94289 0.84919 0.97350 1.21533 0.97688 0.93594 1.01165 1.21482 0.95620 0.91802 0.98548 0.90069 1.22582 1.00156 0.96959 0.96765 1.21923 0.95866 0.93609 1.01532 1.23726 0.92641 0.97346 1.04157 0.85630 1.23361 0.95627 1.02660 0.97921 1.23179 1.02579 0.96974 0.95977 0.87139 0.93880 0.79606 0.96616 0.96114 0.92910 0.92836 0.91370 0.92319 0.90796 0.89996 0.87239 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.44 13.06 21.65 0.28 -61.15 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 3 Si 0.98 47.20 29.55 68.60 2.03 49.23 16 4 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.25 -14.69 9.99 84.04 0.84 -13.85 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.75 -40.71 5.60 -343.45 -1.92 -42.63 16 10 C 0.15 6.49 6.11 86.38 0.53 7.02 16 11 C -0.10 -3.53 4.87 30.59 0.15 -3.38 16 12 C -0.06 -1.50 2.83 -9.72 -0.03 -1.53 16 13 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.13 -3.17 5.03 31.89 0.16 -3.01 16 15 C -0.09 -1.79 6.77 31.67 0.21 -1.58 16 16 C -0.16 -3.11 7.19 -9.03 -0.06 -3.18 16 17 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 18 C -0.16 -3.40 9.95 31.56 0.31 -3.09 16 19 C -0.17 -3.91 6.33 -9.99 -0.06 -3.97 16 20 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 21 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 22 H 0.37 21.39 7.67 -92.71 -0.71 20.67 16 23 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.02 0.88 7.38 -2.39 -0.02 0.86 16 25 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 1.71 8.01 -2.39 -0.02 1.69 16 28 H 0.06 1.59 7.31 -2.39 -0.02 1.57 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 1.97 7.27 -2.38 -0.02 1.95 16 Total: -1.00 -65.11 261.10 3.27 -61.84 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.37 Total: 23.44 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 2.52 Total: -30.73 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -1.64 Total: -103.78 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -65.11 3.27 -61.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717093673.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.895 kcal (2) G-P(sol) polarization free energy of solvation -65.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds