Wall clock time and date at job start Mon Mar 30 2020 02:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48502 * 109.47020 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46972 * 299.99909 * 3 2 1 6 6 H 1.48503 * 109.47026 * 60.00131 * 3 2 1 7 7 C 1.37883 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99761 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00098 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99954 * 173.92123 * 10 9 7 12 12 C 1.52997 * 112.84726 * 166.39766 * 11 10 9 13 13 C 1.53001 * 117.50305 * 18.28757 * 12 11 10 14 14 C 1.53001 * 60.00028 * 252.50956 * 13 12 11 15 15 C 1.53777 * 113.61439 * 35.08738 * 11 10 9 16 16 C 1.53776 * 87.07985 * 220.01969 * 15 11 10 17 17 C 1.53774 * 87.08494 * 25.43520 * 16 15 11 18 18 H 0.97005 * 120.00034 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46939 * 59.99474 * 9 7 2 20 20 H 1.08997 * 109.47409 * 300.00094 * 9 7 2 21 21 H 1.00901 * 111.00020 * 49.96647 * 10 9 7 22 22 H 1.09007 * 115.54626 * 163.99952 * 12 11 10 23 23 H 1.08997 * 117.49662 * 359.97438 * 13 12 11 24 24 H 1.08999 * 117.49742 * 145.02469 * 13 12 11 25 25 H 1.09002 * 117.49891 * 252.51052 * 14 13 12 26 26 H 1.09000 * 117.49817 * 107.48744 * 14 13 12 27 27 H 1.08994 * 113.61536 * 334.56987 * 15 11 10 28 28 H 1.09001 * 113.61271 * 105.47218 * 15 11 10 29 29 H 1.08998 * 113.61844 * 270.88065 * 16 15 11 30 30 H 1.09001 * 113.61172 * 139.98364 * 16 15 11 31 31 H 1.08993 * 113.61911 * 220.02038 * 17 16 15 32 32 H 1.08996 * 113.69536 * 89.12134 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0005 11 6 1.5109 -4.9021 0.1458 12 6 2.4058 -6.1002 -0.1772 13 6 3.9190 -5.8737 -0.1715 14 6 3.1797 -6.0687 -1.4968 15 6 0.1427 -4.9460 -0.5550 16 6 -0.3701 -5.7261 0.6671 17 6 0.7475 -5.0435 1.4733 18 1 -0.4850 0.8401 -0.0004 19 1 0.6245 -2.5570 -0.8897 20 1 0.6238 -2.5568 0.8902 21 1 2.9009 -3.4969 0.7218 22 1 2.0399 -7.0671 0.1686 23 1 4.2768 -4.8710 0.0620 24 1 4.5489 -6.6916 0.1783 25 1 3.3232 -7.0147 -2.0188 26 1 3.0512 -5.1942 -2.1347 27 1 -0.3192 -3.9659 -0.6726 28 1 0.1426 -5.5285 -1.4763 29 1 -0.2480 -6.8056 0.5788 30 1 -1.3733 -5.4368 0.9801 31 1 1.2356 -5.7046 2.1893 32 1 0.4522 -4.0899 1.9108 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717884938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:59 Heat of formation + Delta-G solvation = 43.664993 kcal Electronic energy + Delta-G solvation = -12594.464047 eV Core-core repulsion = 10556.319586 eV Total energy + Delta-G solvation = -2038.144461 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.55252 -35.46373 -33.53744 -31.55075 -26.76989 -25.21742 -24.09782 -21.99275 -21.61161 -21.05945 -17.34740 -16.68240 -15.56777 -15.07493 -14.53385 -14.16853 -13.70751 -13.05696 -12.42576 -12.30830 -11.60721 -11.50070 -11.17054 -11.00114 -10.82263 -10.66112 -10.42340 -10.27297 -10.09924 -9.77364 -9.65091 -9.31055 -9.00438 -8.46792 -7.14497 -6.02951 -4.04170 3.30862 3.38254 3.43180 4.18750 4.43514 4.96378 5.15590 5.18244 5.29801 5.34268 5.35738 5.45888 5.60794 5.79315 6.00431 6.04740 6.16085 6.27917 6.35253 6.37324 6.54795 6.61125 6.68528 6.75686 7.01185 7.32646 7.53442 7.80962 8.16577 8.44166 8.68079 9.06193 9.60549 11.08096 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.043940 B = 0.009953 C = 0.008707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.077790 B = 2812.492404 C = 3214.870108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.193 3.807 10 N -0.675 5.675 11 C 0.125 3.875 12 C -0.126 4.126 13 C -0.175 4.175 14 C -0.166 4.166 15 C -0.134 4.134 16 C -0.140 4.140 17 C -0.172 4.172 18 H 0.260 0.740 19 H 0.032 0.968 20 H -0.009 1.009 21 H 0.329 0.671 22 H 0.096 0.904 23 H 0.103 0.897 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 -10.807 0.636 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.305 5.305 11 C 0.032 3.968 12 C -0.145 4.145 13 C -0.212 4.212 14 C -0.203 4.203 15 C -0.172 4.172 16 C -0.177 4.177 17 C -0.212 4.212 18 H 0.070 0.930 19 H 0.050 0.950 20 H 0.009 0.991 21 H 0.148 0.852 22 H 0.114 0.886 23 H 0.121 0.879 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.456 -10.699 -0.066 10.978 hybrid contribution 0.062 0.947 0.979 1.363 sum 2.518 -9.752 0.912 10.113 Atomic orbital electron populations 1.69966 1.06025 1.26610 1.51014 1.24970 0.94865 0.99291 0.95393 0.86459 0.80087 0.83487 0.77477 1.19696 1.21020 1.21143 1.21268 0.93473 0.90464 1.50194 0.92111 1.19633 0.91000 0.86796 0.95889 1.60504 1.16990 1.00784 1.52195 1.21560 0.91233 0.90214 0.93779 1.21900 0.92782 0.97495 1.02292 1.22855 0.93800 1.02843 1.01684 1.22796 1.04193 1.02451 0.90900 1.23255 0.95854 1.01490 0.96574 1.22695 0.98285 0.98713 0.98050 1.23647 0.98358 1.01115 0.98040 0.93012 0.94992 0.99096 0.85247 0.88555 0.87863 0.90082 0.90104 0.87897 0.88300 0.92120 0.91054 0.92032 0.92504 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.57 9.25 -34.44 -0.32 -14.89 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.19 4.99 4.23 -4.98 -0.02 4.97 16 10 N -0.67 -14.44 5.52 -100.39 -0.55 -15.00 16 11 C 0.12 2.25 1.39 -130.79 -0.18 2.07 16 12 C -0.13 -1.94 5.16 -90.62 -0.47 -2.41 16 13 C -0.17 -2.55 9.90 -26.73 -0.26 -2.81 16 14 C -0.17 -2.47 10.10 -26.73 -0.27 -2.74 16 15 C -0.13 -2.43 6.90 -25.92 -0.18 -2.61 16 16 C -0.14 -2.19 7.79 -25.92 -0.20 -2.39 16 17 C -0.17 -2.97 7.18 -25.92 -0.19 -3.16 16 18 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 19 H 0.03 0.90 6.45 -51.93 -0.33 0.56 16 20 H -0.01 -0.24 6.26 -51.93 -0.33 -0.56 16 21 H 0.33 6.93 7.78 -39.29 -0.31 6.62 16 22 H 0.10 1.34 7.90 -51.92 -0.41 0.93 16 23 H 0.10 1.65 6.74 -51.93 -0.35 1.30 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 27 H 0.10 2.08 5.58 -51.93 -0.29 1.79 16 28 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 29 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.09 1.72 6.41 -51.93 -0.33 1.38 16 LS Contribution 256.99 15.07 3.87 3.87 Total: -1.00 -28.86 256.99 -7.99 -36.86 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.84 Total: 5.96 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -2.19 Total: -22.47 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.18 Total: -40.98 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.86 -7.99 -36.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717884938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.521 kcal (2) G-P(sol) polarization free energy of solvation -28.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds