Wall clock time and date at job start Mon Mar 30 2020 02:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48502 * 109.47020 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46972 * 299.99909 * 3 2 1 6 6 H 1.48503 * 109.47026 * 60.00131 * 3 2 1 7 7 C 1.37883 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99761 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00098 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99954 * 173.92123 * 10 9 7 12 12 C 1.52997 * 112.84726 * 166.39766 * 11 10 9 13 13 C 1.53001 * 117.50305 * 18.28757 * 12 11 10 14 14 C 1.53001 * 60.00028 * 252.50956 * 13 12 11 15 15 C 1.53777 * 113.61439 * 35.08738 * 11 10 9 16 16 C 1.53776 * 87.07985 * 220.01969 * 15 11 10 17 17 C 1.53774 * 87.08494 * 25.43520 * 16 15 11 18 18 H 0.97005 * 120.00034 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46939 * 59.99474 * 9 7 2 20 20 H 1.08997 * 109.47409 * 300.00094 * 9 7 2 21 21 H 1.00901 * 111.00020 * 49.96647 * 10 9 7 22 22 H 1.09007 * 115.54626 * 163.99952 * 12 11 10 23 23 H 1.08997 * 117.49662 * 359.97438 * 13 12 11 24 24 H 1.08999 * 117.49742 * 145.02469 * 13 12 11 25 25 H 1.09002 * 117.49891 * 252.51052 * 14 13 12 26 26 H 1.09000 * 117.49817 * 107.48744 * 14 13 12 27 27 H 1.08994 * 113.61536 * 334.56987 * 15 11 10 28 28 H 1.09001 * 113.61271 * 105.47218 * 15 11 10 29 29 H 1.08998 * 113.61844 * 270.88065 * 16 15 11 30 30 H 1.09001 * 113.61172 * 139.98364 * 16 15 11 31 31 H 1.08993 * 113.61911 * 220.02038 * 17 16 15 32 32 H 1.08996 * 113.69536 * 89.12134 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0005 11 6 1.5109 -4.9021 0.1458 12 6 2.4058 -6.1002 -0.1772 13 6 3.9190 -5.8737 -0.1715 14 6 3.1797 -6.0687 -1.4968 15 6 0.1427 -4.9460 -0.5550 16 6 -0.3701 -5.7261 0.6671 17 6 0.7475 -5.0435 1.4733 18 1 -0.4850 0.8401 -0.0004 19 1 0.6245 -2.5570 -0.8897 20 1 0.6238 -2.5568 0.8902 21 1 2.9009 -3.4969 0.7218 22 1 2.0399 -7.0671 0.1686 23 1 4.2768 -4.8710 0.0620 24 1 4.5489 -6.6916 0.1783 25 1 3.3232 -7.0147 -2.0188 26 1 3.0512 -5.1942 -2.1347 27 1 -0.3192 -3.9659 -0.6726 28 1 0.1426 -5.5285 -1.4763 29 1 -0.2480 -6.8056 0.5788 30 1 -1.3733 -5.4368 0.9801 31 1 1.2356 -5.7046 2.1893 32 1 0.4522 -4.0899 1.9108 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717884938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:59 Heat of formation + Delta-G solvation = 25.907264 kcal Electronic energy + Delta-G solvation = -12595.234080 eV Core-core repulsion = 10556.319586 eV Total energy + Delta-G solvation = -2038.914494 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.99049 -36.71968 -35.54028 -33.51722 -28.74660 -26.69347 -25.70159 -23.68276 -22.93661 -22.43895 -18.86349 -18.68294 -16.96072 -16.79669 -16.36497 -15.71459 -15.25048 -14.48285 -14.33140 -13.99066 -13.32212 -13.08428 -12.95801 -12.57265 -12.43409 -12.25919 -12.07851 -11.82595 -11.44466 -11.30754 -11.17838 -11.00248 -10.64216 -10.55237 -8.93179 -8.23252 -6.33555 1.38671 1.39357 1.53040 2.38461 2.98048 3.10098 3.53239 3.73523 3.81827 3.87889 4.05107 4.28201 4.36869 4.49000 4.74074 4.78182 4.87124 4.93623 5.02660 5.07448 5.10844 5.19255 5.29131 5.35585 5.43607 5.50641 5.63326 5.67108 6.06112 6.50159 6.77550 6.94425 7.37141 8.88299 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.043940 B = 0.009953 C = 0.008707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.077790 B = 2812.492404 C = 3214.870108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.214 3.786 10 N -0.674 5.674 11 C 0.117 3.883 12 C -0.128 4.128 13 C -0.169 4.169 14 C -0.166 4.166 15 C -0.144 4.144 16 C -0.121 4.121 17 C -0.172 4.172 18 H 0.264 0.736 19 H 0.002 0.998 20 H -0.034 1.034 21 H 0.331 0.669 22 H 0.126 0.874 23 H 0.082 0.918 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 -12.235 0.894 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.087 3.913 10 N -0.303 5.303 11 C 0.025 3.975 12 C -0.146 4.146 13 C -0.206 4.206 14 C -0.203 4.203 15 C -0.181 4.181 16 C -0.158 4.158 17 C -0.211 4.211 18 H 0.073 0.927 19 H 0.020 0.980 20 H -0.016 1.016 21 H 0.149 0.851 22 H 0.144 0.856 23 H 0.101 0.899 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.634 -12.146 0.193 12.680 hybrid contribution -0.319 1.361 0.880 1.652 sum 3.315 -10.785 1.074 11.334 Atomic orbital electron populations 1.70097 1.07707 1.27793 1.51604 1.25918 0.95780 1.03248 0.94688 0.85319 0.78949 0.78504 0.77729 1.18737 1.20421 1.20313 1.21644 0.93682 0.91842 1.50460 0.92107 1.19190 0.90840 0.88028 0.93257 1.60396 1.16309 1.01214 1.52421 1.21837 0.91600 0.89640 0.94389 1.21918 0.92752 0.96982 1.02952 1.22901 0.93548 1.02892 1.01283 1.22800 1.04112 1.02700 0.90688 1.23198 0.96310 1.00135 0.98505 1.22679 0.97673 1.00176 0.95298 1.23535 0.99223 1.00202 0.98143 0.92711 0.97964 1.01621 0.85052 0.85641 0.89902 0.87069 0.87159 0.90816 0.92465 0.90848 0.87486 0.91948 0.90066 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -31.29 9.25 25.60 0.24 -31.05 16 8 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 9 C 0.21 11.65 4.23 85.56 0.36 12.01 16 10 N -0.67 -29.59 5.52 -471.54 -2.60 -32.19 16 11 C 0.12 4.18 1.39 4.05 0.01 4.18 16 12 C -0.13 -3.58 5.16 -10.79 -0.06 -3.63 16 13 C -0.17 -4.49 9.90 30.60 0.30 -4.19 16 14 C -0.17 -4.55 10.10 30.60 0.31 -4.24 16 15 C -0.14 -5.25 6.90 31.12 0.21 -5.03 16 16 C -0.12 -3.58 7.79 31.12 0.24 -3.34 16 17 C -0.17 -5.81 7.18 31.12 0.22 -5.59 16 18 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 19 H 0.00 0.14 6.45 -2.38 -0.02 0.13 16 20 H -0.03 -1.97 6.26 -2.39 -0.01 -1.99 16 21 H 0.33 14.21 7.78 -89.69 -0.70 13.51 16 22 H 0.13 2.86 7.90 -2.38 -0.02 2.85 16 23 H 0.08 2.55 6.74 -2.39 -0.02 2.54 16 24 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.06 2.57 5.58 -2.39 -0.01 2.55 16 28 H 0.07 2.43 8.10 -2.39 -0.02 2.41 16 29 H 0.11 2.47 7.94 -2.39 -0.02 2.45 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.34 8.10 -2.39 -0.02 2.32 16 32 H 0.05 2.13 6.41 -2.39 -0.02 2.11 16 Total: -1.00 -63.73 256.99 2.41 -61.32 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.40 Total: 20.86 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 2.30 Total: -40.30 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -2.32 Total: -88.98 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.73 2.41 -61.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717884938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.223 kcal (2) G-P(sol) polarization free energy of solvation -63.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds