Wall clock time and date at job start Mon Mar 30 2020 02:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99979 * 2 1 4 4 H 1.48499 * 109.46960 * 239.99838 * 3 2 1 5 5 H 1.48501 * 109.46723 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47299 * 119.99299 * 3 2 1 7 7 C 1.37872 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00343 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99981 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47270 * 180.02562 * 9 7 2 11 11 C 1.53137 * 109.42753 * 185.00492 * 10 9 7 12 12 C 1.53710 * 108.89220 * 185.90673 * 11 10 9 13 13 H 1.08991 * 112.61928 * 188.03402 * 12 11 10 14 14 C 1.54614 * 107.80782 * 312.37451 * 12 11 10 15 15 C 1.54288 * 104.84349 * 88.54986 * 14 12 11 16 16 C 1.54609 * 104.84097 * 0.02562 * 15 14 12 17 17 H 1.09002 * 112.21576 * 146.85479 * 16 15 14 18 18 C 1.53705 * 108.35618 * 271.19958 * 16 15 14 19 19 N 1.48710 * 104.22465 * 25.17389 * 16 15 14 20 20 H 0.97005 * 120.00413 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46859 * 60.00241 * 9 7 2 22 22 H 1.08991 * 109.47313 * 300.00209 * 9 7 2 23 23 H 1.09004 * 109.42715 * 304.89465 * 10 9 7 24 24 H 1.08994 * 109.56986 * 66.08464 * 11 10 9 25 25 H 1.08999 * 109.66312 * 305.78729 * 11 10 9 26 26 H 1.09008 * 110.36164 * 207.39511 * 14 12 11 27 27 H 1.08999 * 110.36572 * 329.59300 * 14 12 11 28 28 H 1.08994 * 110.36348 * 241.16965 * 15 14 12 29 29 H 1.08997 * 110.36443 * 118.84613 * 15 14 12 30 30 H 1.09000 * 109.56827 * 167.69532 * 18 16 15 31 31 H 1.09002 * 109.57112 * 288.05145 * 18 16 15 32 32 H 1.00910 * 111.00200 * 199.29920 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4830 -4.9841 -0.1242 12 6 2.4760 -6.1476 0.0272 13 1 2.0242 -7.1153 -0.1906 14 6 3.6922 -5.8525 -0.8807 15 6 4.6536 -5.0293 0.0017 16 6 3.9313 -4.9024 1.3628 17 1 4.6293 -4.8863 2.1998 18 6 3.0438 -3.6481 1.3247 19 7 3.0262 -6.0816 1.4075 20 1 -0.4851 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8902 23 1 2.9286 -3.5558 -0.8408 24 1 1.0042 -5.0378 -1.1019 25 1 0.7255 -5.0466 0.6571 26 1 4.1667 -6.7827 -1.1934 27 1 3.3840 -5.2736 -1.7513 28 1 4.8183 -4.0439 -0.4339 29 1 5.6009 -5.5547 0.1228 30 1 2.3652 -3.6549 2.1777 31 1 3.6700 -2.7566 1.3614 32 1 2.2898 -5.9468 2.0841 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718967016.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:22 Heat of formation + Delta-G solvation = -18.758619 kcal Electronic energy + Delta-G solvation = -12848.975840 eV Core-core repulsion = 10808.124488 eV Total energy + Delta-G solvation = -2040.851352 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.06295 -33.92344 -31.71321 -30.81021 -30.09190 -26.99075 -23.74885 -23.20474 -20.53220 -19.84102 -18.62787 -16.40007 -15.83823 -15.31489 -14.33917 -13.58920 -13.24982 -12.63172 -12.41712 -12.23178 -11.97461 -11.80439 -11.46268 -11.03451 -10.97694 -10.70464 -10.60143 -10.50287 -9.99824 -9.88931 -9.57550 -9.33411 -8.96320 -8.34514 -7.96088 -5.99253 -4.01123 3.32271 3.36978 3.39093 4.45561 4.59851 4.95675 5.12692 5.35924 5.39720 5.55260 5.69158 5.71822 5.83204 5.86543 5.99665 6.10714 6.23651 6.28603 6.46430 6.54534 6.56957 6.66354 6.88442 7.03961 7.13293 7.19658 7.65159 7.67100 7.82324 8.00490 8.43983 9.05164 9.62539 11.12021 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057023 B = 0.009818 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.910931 B = 2851.211808 C = 3038.643662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.144 4.144 12 C 0.062 3.938 13 H 0.087 0.913 14 C -0.116 4.116 15 C -0.116 4.116 16 C 0.058 3.942 17 H 0.086 0.914 18 C -0.129 4.129 19 N -0.664 5.664 20 H 0.260 0.740 21 H 0.013 0.987 22 H 0.013 0.987 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.892 -9.560 0.488 11.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.100 4.100 11 C -0.183 4.183 12 C -0.048 4.048 13 H 0.105 0.895 14 C -0.154 4.154 15 C -0.154 4.154 16 C -0.052 4.052 17 H 0.104 0.896 18 C -0.168 4.168 19 N -0.292 5.292 20 H 0.070 0.930 21 H 0.032 0.968 22 H 0.031 0.969 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.253 -9.997 0.447 11.800 hybrid contribution -0.331 1.868 -0.021 1.897 sum 5.922 -8.129 0.426 10.067 Atomic orbital electron populations 1.69954 1.06044 1.26602 1.51005 1.25023 0.94810 0.99164 0.95494 0.86705 0.79620 0.83379 0.78581 1.20291 1.21335 1.20284 1.21201 0.92871 0.90985 1.50253 0.92758 1.19134 0.93650 0.91295 0.96913 1.21555 0.97806 0.94273 0.96318 1.22487 0.98019 0.96036 1.01715 1.22858 0.94819 0.97574 0.89558 0.89525 1.22334 0.95588 0.99409 0.98040 1.22325 0.97773 1.00180 0.95089 1.22927 0.94843 0.89984 0.97411 0.89625 1.22552 0.98491 0.97438 0.98343 1.64015 1.20101 1.39867 1.05187 0.93023 0.96831 0.96898 0.91820 0.92168 0.92475 0.92265 0.91151 0.90916 0.92282 0.92558 0.91046 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.39 8.48 -34.44 -0.29 -14.68 16 8 H 0.05 1.47 7.07 -52.48 -0.37 1.10 16 9 C 0.03 0.70 4.44 -27.88 -0.12 0.57 16 10 C -0.08 -1.64 1.80 -89.75 -0.16 -1.80 16 11 C -0.14 -2.48 4.74 -26.29 -0.12 -2.61 16 12 C 0.06 0.92 4.59 -65.48 -0.30 0.62 16 13 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 14 C -0.12 -1.66 5.97 -25.21 -0.15 -1.81 16 15 C -0.12 -1.71 5.98 -25.21 -0.15 -1.86 16 16 C 0.06 0.90 4.55 -65.50 -0.30 0.61 16 17 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 18 C -0.13 -2.41 4.56 -25.56 -0.12 -2.52 16 19 N -0.66 -10.00 7.40 -94.66 -0.70 -10.71 16 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 1.31 5.51 -51.93 -0.29 1.02 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 26 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.07 1.04 7.04 -51.93 -0.37 0.67 16 28 H 0.07 1.13 7.04 -51.93 -0.37 0.77 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 31 H 0.07 1.43 7.16 -51.93 -0.37 1.05 16 32 H 0.33 4.88 8.23 -39.29 -0.32 4.55 16 LS Contribution 245.55 15.07 3.70 3.70 Total: -1.00 -29.30 245.55 -8.11 -37.42 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.01 Total: 1.21 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -1.82 Total: -21.97 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.04 Total: -37.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.30 -8.11 -37.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718967016.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.658 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds