Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48505 * 109.46672 * 60.00083 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47429 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47378 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99888 * 180.02562 * 11 10 9 13 13 H 1.09003 * 115.56138 * 9.34267 * 12 11 10 14 14 C 1.53122 * 117.51158 * 223.60854 * 12 11 10 15 15 C 1.52458 * 59.85636 * 252.55126 * 14 12 11 16 16 C 1.53261 * 128.58211 * 117.59940 * 15 14 12 17 17 C 1.53895 * 86.88265 * 114.94521 * 16 15 14 18 18 C 1.53258 * 128.58524 * 242.39400 * 15 14 12 19 19 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 21 21 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 22 22 H 1.09004 * 109.46862 * 60.00067 * 10 9 7 23 23 H 1.09000 * 109.47250 * 300.00090 * 10 9 7 24 24 H 1.00901 * 111.00013 * 303.95621 * 11 10 9 25 25 H 1.08998 * 117.51852 * 0.02562 * 14 12 11 26 26 H 1.09006 * 117.51491 * 145.06295 * 14 12 11 27 27 H 1.08996 * 113.64637 * 229.44167 * 16 15 14 28 28 H 1.09000 * 113.64709 * 0.44658 * 16 15 14 29 29 H 1.08999 * 113.58442 * 270.39214 * 17 16 15 30 30 H 1.08997 * 113.58679 * 139.57000 * 17 16 15 31 31 H 1.09001 * 113.64790 * 359.55949 * 18 15 14 32 32 H 1.09003 * 113.64087 * 130.47187 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 7 1.5106 -4.9343 -0.0033 12 6 2.4351 -6.0759 -0.0037 13 1 3.4852 -5.8308 0.1561 14 6 2.1162 -7.2440 -0.9408 15 6 1.9249 -7.3956 0.5641 16 6 0.6315 -7.6655 1.3408 17 6 1.2545 -9.0135 1.7446 18 6 2.6299 -8.3591 1.5250 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5563 -0.8920 21 1 0.6240 -2.5576 0.8880 22 1 2.8718 -3.6051 0.8873 23 1 2.8718 -3.6035 -0.8927 24 1 0.8744 -4.9848 0.7783 25 1 1.2207 -7.1652 -1.5572 26 1 2.9564 -7.7673 -1.3974 27 1 0.4756 -6.9872 2.1796 28 1 -0.2482 -7.7635 0.7046 29 1 1.0389 -9.8208 1.0447 30 1 1.0632 -9.2892 2.7817 31 1 3.3523 -9.0131 1.0366 32 1 3.0315 -7.8735 2.4144 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721289066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = 33.040827 kcal Electronic energy + Delta-G solvation = -11858.403667 eV Core-core repulsion = 9819.798507 eV Total energy + Delta-G solvation = -2038.605159 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.41357 -35.52934 -33.31456 -31.78116 -28.37975 -25.67014 -24.02877 -22.98661 -20.80831 -20.54892 -18.14829 -16.33276 -15.61995 -15.19403 -15.10007 -14.40451 -14.01658 -12.83113 -12.47510 -12.38050 -12.19751 -11.88713 -11.45506 -11.37372 -11.10733 -10.92924 -10.54951 -10.29260 -10.19615 -9.84249 -9.59798 -9.26016 -9.08724 -8.34315 -7.66574 -5.98846 -4.01385 3.32066 3.39252 3.43506 3.92827 4.31078 4.49457 4.69479 4.80502 4.87475 5.01312 5.29279 5.37222 5.60011 5.67139 5.75124 5.77278 5.87669 5.94585 6.05527 6.26299 6.34044 6.36991 6.39666 6.47874 6.99070 7.53776 7.74597 7.84616 7.97564 8.09796 8.44711 9.06049 9.62421 11.12751 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.079473 B = 0.005927 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.236168 B = 4723.267629 C = 4815.667710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.067 3.933 11 N -0.659 5.659 12 C 0.039 3.961 13 H 0.094 0.906 14 C -0.142 4.142 15 C -0.176 4.176 16 C -0.098 4.098 17 C -0.136 4.136 18 C -0.101 4.101 19 H 0.260 0.740 20 H 0.025 0.975 21 H 0.014 0.986 22 H 0.016 0.984 23 H 0.059 0.941 24 H 0.338 0.662 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.469 -15.122 2.459 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.061 4.061 11 N -0.289 5.289 12 C -0.072 4.072 13 H 0.111 0.889 14 C -0.180 4.180 15 C -0.177 4.177 16 C -0.135 4.135 17 C -0.173 4.173 18 C -0.139 4.139 19 H 0.070 0.930 20 H 0.044 0.956 21 H 0.032 0.968 22 H 0.034 0.966 23 H 0.078 0.922 24 H 0.157 0.843 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.230 -14.979 1.780 15.426 hybrid contribution 0.772 1.012 0.839 1.525 sum 4.002 -13.966 2.619 14.762 Atomic orbital electron populations 1.69984 1.06050 1.26487 1.50779 1.25006 0.94839 0.99238 0.95299 0.86524 0.80076 0.83751 0.77582 1.19760 1.20959 1.21024 1.21210 0.93033 0.90973 1.50720 0.92681 1.19083 0.94059 0.90472 0.97729 1.22216 0.97004 0.88141 0.98700 1.60311 1.18607 1.01218 1.48777 1.22358 0.95892 0.86265 1.02667 0.88875 1.23009 1.03025 1.01590 0.90381 1.22634 0.98785 1.00328 0.95960 1.22344 0.95622 0.96485 0.99052 1.22714 0.96704 0.96889 1.00990 1.22455 0.96340 0.96815 0.98270 0.93041 0.95627 0.96807 0.96552 0.92206 0.84300 0.88305 0.89211 0.89981 0.91320 0.90342 0.91662 0.91781 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.64 5.23 -27.89 -0.15 0.49 16 10 C 0.07 1.47 5.48 -3.82 -0.02 1.45 16 11 N -0.66 -12.43 6.75 -106.95 -0.72 -13.15 16 12 C 0.04 0.62 6.26 -67.93 -0.42 0.19 16 13 H 0.09 1.46 7.90 -51.93 -0.41 1.05 16 14 C -0.14 -1.94 10.46 -26.95 -0.28 -2.22 16 15 C -0.18 -2.30 2.98 -154.80 -0.46 -2.76 16 16 C -0.10 -1.18 7.60 -26.13 -0.20 -1.38 16 17 C -0.14 -1.37 8.08 -25.80 -0.21 -1.58 16 18 C -0.10 -1.11 8.10 -26.13 -0.21 -1.32 16 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 20 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 24 H 0.34 6.20 8.24 -39.29 -0.32 5.88 16 25 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 26 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 269.53 15.07 4.06 4.06 Total: -1.00 -30.03 269.53 -8.66 -38.69 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.35 Total: 0.96 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -2.36 Total: -20.89 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.01 Total: -39.69 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.03 -8.66 -38.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721289066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.733 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds