Wall clock time and date at job start Mon Mar 30 2020 02:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00293 * 2 1 4 4 H 1.48492 * 109.47511 * 239.99867 * 3 2 1 5 5 H 1.48503 * 109.46892 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46871 * 120.00007 * 3 2 1 7 7 C 1.38813 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00164 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99908 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.42096 * 36.05792 * 10 9 7 12 12 C 1.55856 * 110.47439 * 273.54997 * 10 9 7 13 13 C 1.56318 * 105.95046 * 248.28646 * 12 10 9 14 14 C 1.51378 * 101.61767 * 24.84635 * 13 12 10 15 15 H 1.09001 * 109.43331 * 69.67457 * 14 13 12 16 16 C 1.50535 * 124.65283 * 202.85283 * 14 13 12 17 17 C 1.55854 * 104.25904 * 145.77278 * 16 14 13 18 18 C 1.56313 * 105.89205 * 352.85180 * 17 16 14 19 19 C 1.50529 * 110.58529 * 158.64792 * 10 9 7 20 20 H 1.09005 * 109.97858 * 199.05853 * 19 10 9 21 21 H 0.97003 * 119.99698 * 359.97438 * 1 2 3 22 22 H 0.96998 * 119.99710 * 0.02562 * 9 7 2 23 23 H 1.09002 * 110.16820 * 7.43060 * 12 10 9 24 24 H 1.09002 * 110.16726 * 129.14944 * 12 10 9 25 25 H 1.09003 * 110.97627 * 142.96884 * 13 12 10 26 26 H 1.08993 * 110.98528 * 266.75733 * 13 12 10 27 27 H 1.08996 * 110.47198 * 27.07626 * 16 14 13 28 28 H 1.08999 * 110.58343 * 264.51910 * 16 14 13 29 29 H 1.09001 * 110.16223 * 233.74888 * 17 16 14 30 30 H 1.09002 * 110.16515 * 111.96566 * 17 16 14 31 31 H 1.09002 * 110.98120 * 217.06403 * 18 17 16 32 32 H 1.09005 * 110.97644 * 93.28238 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9638 -3.5736 0.5989 12 6 2.4077 -4.0831 -1.4594 13 6 1.5473 -5.3546 -1.7533 14 6 0.3941 -5.1717 -0.7899 15 1 -0.2245 -4.3368 -1.1191 16 6 -0.4775 -6.2866 -0.2766 17 6 -0.8271 -5.8604 1.1812 18 6 0.0347 -4.5896 1.4740 19 6 1.1864 -4.7716 0.5116 20 1 1.8042 -5.6131 0.8253 21 1 -0.4850 0.8401 0.0004 22 1 0.3555 -2.3881 -0.0005 23 1 2.1500 -3.2856 -2.1563 24 1 3.4686 -4.3211 -1.5371 25 1 1.1977 -5.3592 -2.7858 26 1 2.1045 -6.2637 -1.5277 27 1 0.0696 -7.2294 -0.2774 28 1 -1.3835 -6.3720 -0.8765 29 1 -0.5691 -6.6580 1.8779 30 1 -1.8878 -5.6214 1.2587 31 1 0.3853 -4.5850 2.5060 32 1 -0.5223 -3.6800 1.2486 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722098665.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:53 Heat of formation + Delta-G solvation = -0.268848 kcal Electronic energy + Delta-G solvation = -12788.780762 eV Core-core repulsion = 10748.731187 eV Total energy + Delta-G solvation = -2040.049575 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.60037 -34.50315 -32.75730 -30.63015 -28.36091 -26.11950 -25.02907 -23.09123 -20.40398 -19.32013 -18.46502 -17.26749 -15.03411 -14.84751 -14.36844 -14.08132 -13.75227 -12.86632 -12.52785 -12.14763 -11.99109 -11.31012 -10.96903 -10.80022 -10.74265 -10.63550 -10.28910 -10.18104 -10.11047 -9.93450 -9.78502 -9.44626 -9.28276 -8.81786 -6.86430 -5.70798 -2.97956 3.47205 3.51570 3.52519 4.63592 4.65023 5.13004 5.18813 5.51172 5.61164 5.63923 5.73652 5.80557 5.96801 6.04656 6.08665 6.13550 6.20220 6.26302 6.33593 6.41161 6.53191 6.58717 6.75593 6.83100 6.87324 6.90356 7.12814 7.24433 7.76523 8.49230 9.59748 10.20413 10.55468 11.52125 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.051331 B = 0.010349 C = 0.009388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.352077 B = 2704.810112 C = 2981.893710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.717 5.717 10 C 0.185 3.815 11 H 0.046 0.954 12 C -0.146 4.146 13 C -0.104 4.104 14 C -0.115 4.115 15 H 0.076 0.924 16 C -0.107 4.107 17 C -0.123 4.123 18 C -0.104 4.104 19 C -0.107 4.107 20 H 0.063 0.937 21 H 0.254 0.746 22 H 0.384 0.616 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -11.471 -0.118 11.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.359 5.359 10 C 0.075 3.925 11 H 0.065 0.935 12 C -0.186 4.186 13 C -0.142 4.142 14 C -0.133 4.133 15 H 0.095 0.905 16 C -0.144 4.144 17 C -0.161 4.161 18 C -0.142 4.142 19 C -0.127 4.127 20 H 0.081 0.919 21 H 0.064 0.936 22 H 0.219 0.781 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.658 -11.313 -0.101 11.332 hybrid contribution 0.193 0.954 -0.097 0.978 sum 0.851 -10.358 -0.198 10.395 Atomic orbital electron populations 1.69648 1.05060 1.25603 1.58066 1.24713 0.95482 0.97554 1.03348 0.86295 0.78512 0.83776 0.77779 1.21393 1.21783 1.21378 1.19239 0.90980 0.84292 1.42157 0.91337 1.42423 1.05730 0.99547 1.88170 1.20214 0.93877 0.85909 0.92505 0.93550 1.23797 0.97609 0.96447 1.00782 1.21812 0.96270 0.98104 0.97981 1.22054 0.96219 0.98572 0.96498 0.90517 1.21539 0.98930 0.97918 0.96036 1.22933 0.99708 0.97591 0.95830 1.21721 0.96289 0.97775 0.98409 1.22217 0.96280 0.98734 0.95426 0.91886 0.93578 0.78099 0.90985 0.93457 0.92801 0.92629 0.92405 0.92451 0.92458 0.92222 0.92361 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.72 -18.21 4.84 -53.14 -0.26 -18.46 16 10 C 0.19 3.84 3.44 -67.64 -0.23 3.61 16 11 H 0.05 0.99 8.11 -51.93 -0.42 0.56 16 12 C -0.15 -2.72 6.72 -23.42 -0.16 -2.87 16 13 C -0.10 -1.65 6.73 -25.77 -0.17 -1.82 16 14 C -0.11 -1.89 2.65 -90.20 -0.24 -2.13 16 15 H 0.08 1.47 7.81 -51.93 -0.41 1.07 16 16 C -0.11 -1.49 6.68 -26.44 -0.18 -1.66 16 17 C -0.12 -1.73 6.94 -23.43 -0.16 -1.89 16 18 C -0.10 -1.78 6.41 -25.86 -0.17 -1.95 16 19 C -0.11 -1.89 2.46 -90.29 -0.22 -2.11 16 20 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 21 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.38 10.30 6.19 -40.82 -0.25 10.05 16 23 H 0.07 1.52 7.98 -51.93 -0.41 1.11 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.55 6.84 -51.93 -0.36 1.20 16 LS Contribution 252.62 15.07 3.81 3.81 Total: -1.00 -29.31 252.62 -7.72 -37.03 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.20 Total: 5.85 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -1.78 Total: -18.14 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.47 Total: -46.24 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.31 -7.72 -37.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722098665.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.763 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds