Wall clock time and date at job start Mon Mar 30 2020 02:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00293 * 2 1 4 4 H 1.48492 * 109.47511 * 239.99867 * 3 2 1 5 5 H 1.48503 * 109.46892 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46871 * 120.00007 * 3 2 1 7 7 C 1.38813 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00164 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99908 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.42096 * 36.05792 * 10 9 7 12 12 C 1.55856 * 110.47439 * 273.54997 * 10 9 7 13 13 C 1.56318 * 105.95046 * 248.28646 * 12 10 9 14 14 C 1.51378 * 101.61767 * 24.84635 * 13 12 10 15 15 H 1.09001 * 109.43331 * 69.67457 * 14 13 12 16 16 C 1.50535 * 124.65283 * 202.85283 * 14 13 12 17 17 C 1.55854 * 104.25904 * 145.77278 * 16 14 13 18 18 C 1.56313 * 105.89205 * 352.85180 * 17 16 14 19 19 C 1.50529 * 110.58529 * 158.64792 * 10 9 7 20 20 H 1.09005 * 109.97858 * 199.05853 * 19 10 9 21 21 H 0.97003 * 119.99698 * 359.97438 * 1 2 3 22 22 H 0.96998 * 119.99710 * 0.02562 * 9 7 2 23 23 H 1.09002 * 110.16820 * 7.43060 * 12 10 9 24 24 H 1.09002 * 110.16726 * 129.14944 * 12 10 9 25 25 H 1.09003 * 110.97627 * 142.96884 * 13 12 10 26 26 H 1.08993 * 110.98528 * 266.75733 * 13 12 10 27 27 H 1.08996 * 110.47198 * 27.07626 * 16 14 13 28 28 H 1.08999 * 110.58343 * 264.51910 * 16 14 13 29 29 H 1.09001 * 110.16223 * 233.74888 * 17 16 14 30 30 H 1.09002 * 110.16515 * 111.96566 * 17 16 14 31 31 H 1.09002 * 110.98120 * 217.06403 * 18 17 16 32 32 H 1.09005 * 110.97644 * 93.28238 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9638 -3.5736 0.5989 12 6 2.4077 -4.0831 -1.4594 13 6 1.5473 -5.3546 -1.7533 14 6 0.3941 -5.1717 -0.7899 15 1 -0.2245 -4.3368 -1.1191 16 6 -0.4775 -6.2866 -0.2766 17 6 -0.8271 -5.8604 1.1812 18 6 0.0347 -4.5896 1.4740 19 6 1.1864 -4.7716 0.5116 20 1 1.8042 -5.6131 0.8253 21 1 -0.4850 0.8401 0.0004 22 1 0.3555 -2.3881 -0.0005 23 1 2.1500 -3.2856 -2.1563 24 1 3.4686 -4.3211 -1.5371 25 1 1.1977 -5.3592 -2.7858 26 1 2.1045 -6.2637 -1.5277 27 1 0.0696 -7.2294 -0.2774 28 1 -1.3835 -6.3720 -0.8765 29 1 -0.5691 -6.6580 1.8779 30 1 -1.8878 -5.6214 1.2587 31 1 0.3853 -4.5850 2.5060 32 1 -0.5223 -3.6800 1.2486 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722098665.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:52 Heat of formation + Delta-G solvation = -17.361916 kcal Electronic energy + Delta-G solvation = -12789.521973 eV Core-core repulsion = 10748.731187 eV Total energy + Delta-G solvation = -2040.790786 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.99970 -36.24070 -34.44643 -32.45551 -29.95121 -27.46192 -26.65725 -25.03896 -21.74082 -20.58009 -20.03439 -19.33431 -16.71535 -16.50108 -15.79267 -15.64296 -15.36329 -14.69793 -13.99571 -13.63672 -13.36769 -13.08406 -12.85068 -12.46906 -12.25416 -12.12872 -12.00421 -11.91875 -11.54069 -11.34353 -11.19827 -11.10180 -10.88416 -10.67058 -8.95210 -7.92584 -5.19419 1.45305 1.48463 1.54486 2.56941 3.29457 3.41743 3.84822 3.91173 4.06985 4.27621 4.41910 4.44436 4.57360 4.73375 4.76620 4.79767 4.90797 4.92728 5.00559 5.08877 5.17445 5.26471 5.36170 5.38534 5.44457 5.50189 5.63320 5.70837 5.73613 6.30893 7.35937 8.16258 8.39313 9.31097 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.051331 B = 0.010349 C = 0.009388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.352077 B = 2704.810112 C = 2981.893710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.172 3.828 11 H 0.039 0.961 12 C -0.142 4.142 13 C -0.093 4.093 14 C -0.107 4.107 15 H 0.037 0.963 16 C -0.100 4.100 17 C -0.115 4.115 18 C -0.109 4.109 19 C -0.110 4.110 20 H 0.090 0.910 21 H 0.249 0.751 22 H 0.373 0.627 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 -13.465 -0.116 13.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.800 3.200 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.369 5.369 10 C 0.063 3.937 11 H 0.057 0.943 12 C -0.182 4.182 13 C -0.131 4.131 14 C -0.126 4.126 15 H 0.056 0.944 16 C -0.138 4.138 17 C -0.152 4.152 18 C -0.146 4.146 19 C -0.129 4.129 20 H 0.108 0.892 21 H 0.058 0.942 22 H 0.206 0.794 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.558 -13.346 -0.103 13.437 hybrid contribution -0.031 1.544 -0.082 1.547 sum 1.527 -11.801 -0.185 11.901 Atomic orbital electron populations 1.69818 1.06573 1.25905 1.59975 1.25522 0.96351 1.00940 1.04214 0.85241 0.77193 0.79433 0.78099 1.20571 1.22213 1.20477 1.19628 0.91354 0.85538 1.40470 0.90966 1.42591 1.05374 1.00655 1.88276 1.20524 0.93916 0.85205 0.94071 0.94324 1.23635 0.99399 0.97049 0.98116 1.21774 0.95488 0.97527 0.98294 1.22014 0.96133 0.98534 0.95912 0.94408 1.21536 0.99009 0.97735 0.95499 1.22896 0.99213 0.96401 0.96693 1.21708 0.96500 0.97953 0.98480 1.22202 0.96397 0.97967 0.96338 0.89200 0.94178 0.79405 0.94349 0.91617 0.92009 0.89501 0.89746 0.91560 0.89870 0.91935 0.92132 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.12 13.06 21.65 0.28 -60.83 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 3 Si 0.97 47.42 29.55 68.60 2.03 49.45 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.24 -13.65 9.97 84.03 0.84 -12.82 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.73 -38.12 4.84 -322.04 -1.56 -39.68 16 10 C 0.17 7.10 3.44 45.18 0.16 7.25 16 11 H 0.04 1.63 8.11 -2.39 -0.02 1.61 16 12 C -0.14 -5.16 6.72 32.74 0.22 -4.94 16 13 C -0.09 -2.71 6.73 31.22 0.21 -2.50 16 14 C -0.11 -3.36 2.65 -10.52 -0.03 -3.39 16 15 H 0.04 1.47 7.81 -2.39 -0.02 1.45 16 16 C -0.10 -2.46 6.68 30.78 0.21 -2.25 16 17 C -0.11 -2.92 6.94 32.73 0.23 -2.69 16 18 C -0.11 -3.66 6.41 31.16 0.20 -3.46 16 19 C -0.11 -3.72 2.46 -10.58 -0.03 -3.74 16 20 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 21 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 22 H 0.37 20.99 6.19 -92.71 -0.57 20.42 16 23 H 0.04 1.64 7.98 -2.39 -0.02 1.62 16 24 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.61 6.84 -2.38 -0.02 1.60 16 Total: -1.00 -64.27 252.62 3.72 -60.55 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.51 Total: 23.22 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 2.47 Total: -32.70 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -1.28 Total: -100.52 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -64.27 3.72 -60.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722098665.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.187 kcal (2) G-P(sol) polarization free energy of solvation -64.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds