Wall clock time and date at job start Mon Mar 30 2020 02:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48491 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47148 * 299.99869 * 3 2 1 6 6 H 1.48503 * 109.46903 * 59.99508 * 3 2 1 7 7 C 1.37875 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99815 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47265 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00398 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47444 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47445 * 179.97438 * 12 11 10 14 14 C 1.54639 * 111.03467 * 72.97178 * 13 12 11 15 15 C 1.51102 * 104.72213 * 142.67029 * 14 13 12 16 16 C 1.30534 * 111.10436 * 343.56216 * 15 14 13 17 17 C 1.51096 * 111.10422 * 0.02562 * 16 15 14 18 18 H 0.97004 * 120.00489 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47403 * 59.99642 * 9 7 2 20 20 H 1.09001 * 109.47181 * 299.99554 * 9 7 2 21 21 H 1.00907 * 111.00154 * 56.04551 * 10 9 7 22 22 H 1.08998 * 109.47059 * 59.99300 * 11 10 9 23 23 H 1.09000 * 109.46710 * 300.00120 * 11 10 9 24 24 H 1.09000 * 109.47345 * 60.00115 * 12 11 10 25 25 H 1.09000 * 109.47269 * 299.99782 * 12 11 10 26 26 H 1.09007 * 110.94289 * 308.99201 * 13 12 11 27 27 H 1.08992 * 110.38567 * 23.86009 * 14 13 12 28 28 H 1.08997 * 110.38675 * 261.47791 * 14 13 12 29 29 H 1.07997 * 124.44898 * 163.82826 * 15 14 13 30 30 H 1.07996 * 124.44503 * 179.97438 * 16 15 14 31 31 H 1.08994 * 110.38987 * 135.24587 * 17 16 15 32 32 H 1.09002 * 110.38585 * 257.51121 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2056 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5303 -6.0430 0.0019 13 6 1.8010 -7.3880 0.0019 14 6 1.1654 -7.6748 -1.3783 15 6 1.3428 -9.1615 -1.5813 16 6 2.2344 -9.6450 -0.7596 17 6 2.7998 -8.5614 0.1287 18 1 -0.4851 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6241 -2.5567 0.8903 21 1 2.8399 -3.5483 0.7836 22 1 0.8814 -4.9816 -0.8894 23 1 0.8795 -4.9813 0.8905 24 1 3.1545 -5.9686 0.8923 25 1 3.1558 -5.9685 -0.8877 26 1 1.0518 -7.4249 0.7929 27 1 1.6862 -7.1202 -2.1588 28 1 0.1065 -7.4164 -1.3698 29 1 0.8058 -9.7466 -2.3132 30 1 2.5286 -10.6833 -0.7194 31 1 2.8523 -8.9059 1.1614 32 1 3.7873 -8.2604 -0.2211 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724205289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:59 Heat of formation + Delta-G solvation = -3.370076 kcal Electronic energy + Delta-G solvation = -11750.347232 eV Core-core repulsion = 9710.163177 eV Total energy + Delta-G solvation = -2040.184055 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.86268 -35.49582 -32.81739 -31.16865 -28.19327 -27.45448 -25.20039 -22.04201 -21.16667 -19.80913 -18.70931 -16.42713 -16.04616 -15.28143 -14.50218 -14.47320 -13.44220 -13.05317 -12.65091 -12.39332 -12.15484 -12.00456 -11.33808 -11.20777 -11.14160 -11.05467 -10.85776 -10.59248 -10.43522 -10.19299 -9.79809 -9.12318 -8.89445 -8.46327 -7.24567 -6.01183 -4.03072 2.23538 3.32452 3.39442 3.44927 4.44531 4.61415 4.69655 4.92171 5.25655 5.34452 5.35638 5.58559 5.61492 5.67178 5.79402 5.82322 5.97871 6.06444 6.12318 6.21808 6.32968 6.47320 6.61074 6.65549 6.88016 7.29642 7.45808 7.81714 8.15957 8.44029 8.66042 9.06876 9.61931 11.10094 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.099255 B = 0.005422 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 282.034132 B = 5162.709803 C = 5301.231067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.693 5.693 11 C 0.059 3.941 12 C -0.106 4.106 13 C -0.091 4.091 14 C -0.099 4.099 15 C -0.165 4.165 16 C -0.174 4.174 17 C -0.097 4.097 18 H 0.261 0.739 19 H 0.027 0.973 20 H -0.015 1.015 21 H 0.327 0.673 22 H 0.063 0.937 23 H 0.015 0.985 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 -15.763 -0.317 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.323 5.323 11 C -0.071 4.071 12 C -0.144 4.144 13 C -0.110 4.110 14 C -0.136 4.136 15 C -0.183 4.183 16 C -0.192 4.192 17 C -0.134 4.134 18 H 0.070 0.930 19 H 0.045 0.955 20 H 0.003 0.997 21 H 0.143 0.857 22 H 0.081 0.919 23 H 0.033 0.967 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.084 0.916 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.220 -15.610 -1.005 15.970 hybrid contribution -0.065 0.804 0.853 1.174 sum 3.154 -14.806 -0.152 15.139 Atomic orbital electron populations 1.69976 1.06109 1.26651 1.51109 1.25001 0.94877 0.99399 0.95375 0.86424 0.80071 0.83321 0.77491 1.19640 1.20985 1.21101 1.21251 0.93571 0.90292 1.50082 0.91902 1.19556 0.90651 0.87492 0.95713 1.60656 1.21344 1.01487 1.48785 1.21889 0.95382 0.90194 0.99616 1.21593 0.98120 0.92398 1.02239 1.22045 0.97292 0.94415 0.97240 1.21501 1.01345 0.93289 0.97499 1.23358 0.98890 0.96751 0.99315 1.23275 0.98601 0.98764 0.98579 1.21437 0.99259 0.93680 0.99028 0.92985 0.95479 0.99690 0.85680 0.91871 0.96652 0.92311 0.91210 0.90541 0.90199 0.91239 0.86302 0.86367 0.91564 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.92 9.32 -34.44 -0.32 -15.24 16 8 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 9 C 0.19 5.23 5.44 -4.98 -0.03 5.20 16 10 N -0.69 -15.40 6.49 -115.06 -0.75 -16.15 16 11 C 0.06 1.08 5.59 -3.83 -0.02 1.06 16 12 C -0.11 -1.53 4.84 -26.73 -0.13 -1.66 16 13 C -0.09 -1.13 3.12 -88.91 -0.28 -1.41 16 14 C -0.10 -1.21 5.87 -26.82 -0.16 -1.37 16 15 C -0.17 -1.80 10.78 -35.70 -0.38 -2.18 16 16 C -0.17 -1.82 10.78 -35.70 -0.38 -2.21 16 17 C -0.10 -1.06 6.38 -26.84 -0.17 -1.23 16 18 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 19 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 20 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 21 H 0.33 6.91 8.72 -39.29 -0.34 6.56 16 22 H 0.06 1.18 7.76 -51.93 -0.40 0.77 16 23 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.02 7.74 -51.93 -0.40 0.62 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.82 7.89 -51.93 -0.41 0.41 16 LS Contribution 267.47 15.07 4.03 4.03 Total: -1.00 -30.33 267.47 -8.29 -38.62 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.32 Total: 0.71 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -1.97 Total: -17.54 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: -0.01 Total: -42.76 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.33 -8.29 -38.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724205289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.248 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds