Wall clock time and date at job start Mon Mar 30 2020 02:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48491 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47148 * 299.99869 * 3 2 1 6 6 H 1.48503 * 109.46903 * 59.99508 * 3 2 1 7 7 C 1.37875 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99815 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47265 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00398 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47444 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47445 * 179.97438 * 12 11 10 14 14 C 1.54639 * 111.03467 * 72.97178 * 13 12 11 15 15 C 1.51102 * 104.72213 * 142.67029 * 14 13 12 16 16 C 1.30534 * 111.10436 * 343.56216 * 15 14 13 17 17 C 1.51096 * 111.10422 * 0.02562 * 16 15 14 18 18 H 0.97004 * 120.00489 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47403 * 59.99642 * 9 7 2 20 20 H 1.09001 * 109.47181 * 299.99554 * 9 7 2 21 21 H 1.00907 * 111.00154 * 56.04551 * 10 9 7 22 22 H 1.08998 * 109.47059 * 59.99300 * 11 10 9 23 23 H 1.09000 * 109.46710 * 300.00120 * 11 10 9 24 24 H 1.09000 * 109.47345 * 60.00115 * 12 11 10 25 25 H 1.09000 * 109.47269 * 299.99782 * 12 11 10 26 26 H 1.09007 * 110.94289 * 308.99201 * 13 12 11 27 27 H 1.08992 * 110.38567 * 23.86009 * 14 13 12 28 28 H 1.08997 * 110.38675 * 261.47791 * 14 13 12 29 29 H 1.07997 * 124.44898 * 163.82826 * 15 14 13 30 30 H 1.07996 * 124.44503 * 179.97438 * 16 15 14 31 31 H 1.08994 * 110.38987 * 135.24587 * 17 16 15 32 32 H 1.09002 * 110.38585 * 257.51121 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2056 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5303 -6.0430 0.0019 13 6 1.8010 -7.3880 0.0019 14 6 1.1654 -7.6748 -1.3783 15 6 1.3428 -9.1615 -1.5813 16 6 2.2344 -9.6450 -0.7596 17 6 2.7998 -8.5614 0.1287 18 1 -0.4851 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6241 -2.5567 0.8903 21 1 2.8399 -3.5483 0.7836 22 1 0.8814 -4.9816 -0.8894 23 1 0.8795 -4.9813 0.8905 24 1 3.1545 -5.9686 0.8923 25 1 3.1558 -5.9685 -0.8877 26 1 1.0518 -7.4249 0.7929 27 1 1.6862 -7.1202 -2.1588 28 1 0.1065 -7.4164 -1.3698 29 1 0.8058 -9.7466 -2.3132 30 1 2.5286 -10.6833 -0.7194 31 1 2.8523 -8.9059 1.1614 32 1 3.7873 -8.2604 -0.2211 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724205289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:59 Heat of formation + Delta-G solvation = -22.326926 kcal Electronic energy + Delta-G solvation = -11751.169262 eV Core-core repulsion = 9710.163177 eV Total energy + Delta-G solvation = -2041.006085 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.83429 -37.22985 -34.81460 -32.67653 -29.29124 -28.95255 -26.83152 -23.83065 -22.88380 -20.85088 -19.56302 -18.56764 -17.10689 -16.82644 -16.32566 -15.83920 -15.04579 -14.80092 -14.16823 -13.73210 -13.56028 -13.03140 -12.98783 -12.81046 -12.67433 -12.51137 -12.18367 -11.98749 -11.87025 -11.74108 -11.36061 -11.16164 -10.68157 -9.73664 -9.14354 -8.23930 -6.35859 1.41256 1.42070 1.42226 1.56491 2.39829 3.09312 3.47789 3.72520 3.80606 4.13312 4.26494 4.41382 4.48974 4.55405 4.68616 4.89245 4.91163 4.95100 5.03212 5.05553 5.13888 5.20674 5.24711 5.29227 5.50928 5.61127 5.67462 6.00478 6.07424 6.43288 6.71735 6.88242 7.35617 8.88217 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.099255 B = 0.005422 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 282.034132 B = 5162.709803 C = 5301.231067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.206 3.794 10 N -0.692 5.692 11 C 0.060 3.940 12 C -0.092 4.092 13 C -0.091 4.091 14 C -0.104 4.104 15 C -0.177 4.177 16 C -0.170 4.170 17 C -0.096 4.096 18 H 0.266 0.734 19 H -0.002 1.002 20 H -0.040 1.040 21 H 0.335 0.665 22 H 0.054 0.946 23 H 0.013 0.987 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.079 0.921 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.628 -16.324 -0.111 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.078 3.922 10 N -0.322 5.322 11 C -0.070 4.070 12 C -0.130 4.130 13 C -0.110 4.110 14 C -0.141 4.141 15 C -0.195 4.195 16 C -0.187 4.187 17 C -0.133 4.133 18 H 0.075 0.925 19 H 0.016 0.984 20 H -0.023 1.023 21 H 0.152 0.848 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.159 0.841 31 H 0.097 0.903 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.563 -16.198 -0.796 16.848 hybrid contribution -0.516 0.933 0.792 1.328 sum 4.047 -15.266 -0.004 15.793 Atomic orbital electron populations 1.70103 1.07926 1.28042 1.51533 1.26006 0.95817 1.03575 0.94439 0.85223 0.78911 0.77969 0.77813 1.18539 1.20307 1.20170 1.21598 0.93889 0.91399 1.50678 0.91601 1.19222 0.90726 0.89177 0.93066 1.60545 1.20647 1.01793 1.49233 1.21972 0.96312 0.89619 0.99052 1.21462 0.97083 0.91847 1.02571 1.22002 0.97685 0.93906 0.97407 1.21512 1.00881 0.94653 0.97084 1.23444 0.99836 0.95815 1.00364 1.23489 0.97891 0.99655 0.97709 1.21439 0.98773 0.93028 1.00083 0.92549 0.98410 1.02278 0.84756 0.92771 0.96857 0.91278 0.91482 0.90660 0.91204 0.91804 0.84754 0.84131 0.90271 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.65 13.29 21.45 0.28 -57.36 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.98 44.81 29.54 68.60 2.03 46.84 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.54 -31.52 9.32 25.60 0.24 -31.28 16 8 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 9 C 0.21 11.51 5.44 85.56 0.47 11.98 16 10 N -0.69 -31.08 6.49 -517.95 -3.36 -34.45 16 11 C 0.06 2.21 5.59 86.30 0.48 2.69 16 12 C -0.09 -2.57 4.84 30.59 0.15 -2.42 16 13 C -0.09 -2.16 3.12 -9.68 -0.03 -2.19 16 14 C -0.10 -2.48 5.87 30.53 0.18 -2.30 16 15 C -0.18 -3.53 10.78 26.25 0.28 -3.25 16 16 C -0.17 -3.11 10.78 26.25 0.28 -2.82 16 17 C -0.10 -1.88 6.38 30.52 0.19 -1.69 16 18 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 19 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 20 H -0.04 -2.42 8.14 -2.39 -0.02 -2.44 16 21 H 0.34 14.11 8.72 -89.69 -0.78 13.32 16 22 H 0.05 2.08 7.76 -2.39 -0.02 2.06 16 23 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 1.93 7.92 -2.39 -0.02 1.91 16 26 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.07 1.78 7.74 -2.39 -0.02 1.76 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 30 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.52 7.89 -2.39 -0.02 1.50 16 Total: -1.00 -64.53 267.47 1.94 -62.59 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.29 Total: 13.22 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 2.71 Total: -30.84 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -3.08 Total: -91.81 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.53 1.94 -62.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724205289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.264 kcal (2) G-P(sol) polarization free energy of solvation -64.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds