Wall clock time and date at job start Mon Mar 30 2020 01:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47223 * 2 1 4 4 C 1.53007 * 109.46970 * 120.00174 * 2 1 3 5 5 N 1.46492 * 109.47180 * 174.99810 * 4 2 1 6 6 C 1.35025 * 126.49412 * 124.99783 * 5 4 2 7 7 C 1.39015 * 106.45619 * 180.24335 * 6 5 4 8 8 C 1.41494 * 126.01929 * 179.73844 * 7 6 5 9 9 H 1.07997 * 119.99878 * 0.02562 * 8 7 6 10 10 C 1.39740 * 119.99942 * 179.97438 * 8 7 6 11 11 N 1.30982 * 119.99932 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99905 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47047 * 89.99768 * 12 10 8 14 14 H 1.48497 * 109.47011 * 209.99795 * 12 10 8 15 15 H 1.48501 * 109.47192 * 330.00088 * 12 10 8 16 16 N 1.34839 * 107.95985 * 359.57115 * 7 6 5 17 17 N 1.28676 * 109.63528 * 0.44253 * 16 7 6 18 18 H 1.08997 * 109.46684 * 300.00025 * 1 2 3 19 19 H 1.09005 * 109.46671 * 60.00198 * 1 2 3 20 20 H 1.09000 * 109.47037 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47176 * 239.99392 * 2 1 3 22 22 H 1.08997 * 109.46803 * 299.99515 * 3 2 1 23 23 H 1.08998 * 109.47073 * 59.99868 * 3 2 1 24 24 H 1.09007 * 109.46782 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.46975 * 54.99949 * 4 2 1 26 26 H 1.08998 * 109.46769 * 295.00178 * 4 2 1 27 27 H 1.08002 * 126.76706 * 359.97438 * 6 5 4 28 28 H 0.97001 * 119.99631 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.3741 -0.3996 2.1270 7 6 5.6436 -0.7010 1.6472 8 6 6.8675 -0.4261 2.3019 9 1 6.8667 0.0611 3.2657 10 6 8.0770 -0.7862 1.7018 11 7 8.0778 -1.3785 0.5336 12 14 9.6928 -0.4240 2.5665 13 1 10.0627 -1.5762 3.4273 14 1 10.7564 -0.2004 1.5546 15 1 9.5436 0.7925 3.4050 16 7 5.5030 -1.3046 0.4497 17 7 4.2539 -1.3896 0.1523 18 1 -0.3632 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5139 -0.8899 22 1 1.6768 1.9562 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1301 1.4424 -0.0005 25 1 1.6054 -1.7198 1.2951 26 1 1.7516 -0.1584 2.1370 27 1 4.1345 0.0847 3.0621 28 1 8.9174 -1.6287 0.1173 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725272268.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:22 Heat of formation + Delta-G solvation = 73.678351 kcal Electronic energy + Delta-G solvation = -12055.235008 eV Core-core repulsion = 9914.851680 eV Total energy + Delta-G solvation = -2140.383328 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.83935 -36.20787 -33.28536 -31.54818 -29.24221 -27.01246 -26.30290 -24.61259 -20.96932 -20.19175 -19.38766 -17.07543 -15.50200 -14.96538 -14.75818 -14.16153 -13.34141 -12.94803 -12.89387 -12.60562 -12.19707 -11.85549 -11.20954 -11.08867 -10.91827 -10.88599 -10.78330 -10.51453 -10.18438 -9.64279 -9.22100 -8.84786 -8.44122 -7.42235 -6.30208 -4.11718 2.93925 3.21016 3.24316 3.27682 3.72545 4.19016 4.38979 4.89625 5.04956 5.23767 5.50830 5.61421 5.64337 5.75514 5.84828 5.96538 6.06379 6.17708 6.23550 6.50294 6.53709 6.98607 7.19932 7.37311 7.57145 8.22435 8.48631 8.89237 9.15240 10.28551 10.66906 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.085082 B = 0.008253 C = 0.008074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.014261 B = 3391.806822 C = 3466.988741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.144 3.856 5 N -0.377 5.377 6 C -0.146 4.146 7 C 0.145 3.855 8 C -0.457 4.457 9 H 0.079 0.921 10 C 0.073 3.927 11 N -0.779 5.779 12 Si 0.907 3.093 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.266 1.266 16 N -0.229 5.229 17 N -0.133 5.133 18 H 0.054 0.946 19 H 0.057 0.943 20 H 0.055 0.945 21 H 0.084 0.916 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.154 0.846 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.884 3.464 1.786 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 C -0.201 4.201 4 C 0.020 3.980 5 N -0.173 5.173 6 C -0.296 4.296 7 C 0.015 3.985 8 C -0.493 4.493 9 H 0.097 0.903 10 C -0.145 4.145 11 N -0.406 5.406 12 Si 0.732 3.268 13 H -0.199 1.199 14 H -0.206 1.206 15 H -0.190 1.190 16 N -0.102 5.102 17 N -0.110 5.110 18 H 0.073 0.927 19 H 0.076 0.924 20 H 0.074 0.926 21 H 0.102 0.898 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.172 0.828 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.816 2.671 0.235 10.176 hybrid contribution 0.665 0.714 1.524 1.810 sum -9.151 3.385 1.759 9.914 Atomic orbital electron populations 1.21781 0.94769 1.01721 1.01790 1.21417 0.95271 0.97114 0.99028 1.21774 1.02206 0.95169 1.00914 1.21464 0.77427 1.00536 0.98540 1.49573 1.05545 1.45661 1.16555 1.22925 0.90473 1.17382 0.98834 1.19241 0.92260 0.96702 0.90275 1.18510 0.88195 1.37812 1.04783 0.90273 1.25766 1.00421 0.93770 0.94572 1.70021 1.27651 1.29588 1.13317 0.86354 0.81499 0.79360 0.79548 1.19882 1.20572 1.19001 1.75090 1.05453 1.15600 1.14048 1.81441 0.98577 1.20507 1.10499 0.92730 0.92419 0.92576 0.89783 0.93000 0.93093 0.92028 0.91102 0.90122 0.82838 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.19 37.16 0.34 -1.18 15 2 C -0.11 -1.58 3.01 -90.61 -0.27 -1.85 15 3 C -0.14 -2.13 9.08 37.16 0.34 -1.79 15 4 C 0.14 2.33 5.93 -4.04 -0.02 2.30 15 5 N -0.38 -8.43 3.15 -60.35 -0.19 -8.62 15 6 C -0.15 -3.51 11.61 -15.86 -0.18 -3.70 15 7 C 0.15 4.14 6.72 -85.02 -0.57 3.57 15 8 C -0.46 -12.87 9.38 -37.78 -0.35 -13.23 15 9 H 0.08 2.07 7.84 -52.49 -0.41 1.65 15 10 C 0.07 2.00 5.49 -17.35 -0.10 1.91 15 11 N -0.78 -22.68 11.92 55.54 0.66 -22.01 15 12 Si 0.91 20.05 29.56 -169.99 -5.02 15.02 15 13 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 15 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 16 N -0.23 -6.84 10.55 32.05 0.34 -6.50 15 17 N -0.13 -3.53 13.54 60.35 0.82 -2.72 15 18 H 0.05 0.52 8.14 -51.93 -0.42 0.10 15 19 H 0.06 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.08 1.40 8.08 -51.93 -0.42 0.98 15 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 24 H 0.06 1.15 7.75 -51.93 -0.40 0.75 15 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.08 1.11 8.08 -51.93 -0.42 0.69 15 27 H 0.15 3.16 8.06 -52.49 -0.42 2.74 15 28 H 0.27 7.22 8.30 -40.82 -0.34 6.89 15 LS Contribution 247.42 15.07 3.73 3.73 Total: -1.00 -32.15 247.42 -4.24 -36.39 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -3.75 Total: -1.33 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.82 Total: -13.97 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 1.63 Total: -39.85 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.15 -4.24 -36.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725272268.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.071 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds