Wall clock time and date at job start Mon Mar 30 2020 02:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00135 * 2 1 4 4 H 1.48500 * 109.47344 * 240.00225 * 3 2 1 5 5 H 1.48498 * 109.46972 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46835 * 119.99969 * 3 2 1 7 7 C 1.37879 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99395 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00318 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99708 * 179.97438 * 10 9 7 12 12 C 1.52310 * 115.91399 * 248.28508 * 11 10 9 13 13 C 1.52074 * 115.92780 * 179.97438 * 11 10 9 14 14 H 1.09003 * 117.25467 * 0.45804 * 13 11 10 15 15 C 1.52713 * 120.51849 * 210.74373 * 13 11 10 16 16 C 1.52875 * 110.15610 * 21.47137 * 15 13 11 17 17 C 1.53301 * 108.72981 * 305.38313 * 16 15 13 18 18 C 1.52075 * 114.63952 * 33.37934 * 11 10 9 19 19 H 0.97000 * 119.99401 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.47176 * 59.99649 * 9 7 2 21 21 H 1.09002 * 109.46660 * 299.99656 * 9 7 2 22 22 H 1.00900 * 111.00091 * 56.04250 * 10 9 7 23 23 H 1.08999 * 117.53586 * 146.09970 * 12 11 10 24 24 H 1.08999 * 117.53506 * 0.85478 * 12 11 10 25 25 H 1.09003 * 109.35182 * 261.26159 * 15 13 11 26 26 H 1.09004 * 109.24501 * 141.61454 * 15 13 11 27 27 H 1.09002 * 109.61898 * 65.20487 * 16 15 13 28 28 H 1.08998 * 109.61912 * 185.56675 * 16 15 13 29 29 H 1.09001 * 109.61709 * 194.26098 * 17 16 15 30 30 H 1.08994 * 109.62306 * 314.80586 * 17 16 15 31 31 H 1.08991 * 109.26851 * 287.10804 * 18 11 10 32 32 H 1.09006 * 109.26234 * 46.61007 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5053 -4.9070 -0.0020 12 6 1.6329 -5.7340 1.2707 13 6 2.3905 -6.1436 -0.0024 14 1 3.4689 -5.9855 0.0055 15 6 1.9225 -7.4321 -0.6754 16 6 0.8358 -7.1237 -1.7055 17 6 -0.2880 -6.3413 -1.0163 18 6 0.1887 -4.9139 -0.7630 19 1 -0.4849 0.8401 0.0004 20 1 0.6247 -2.5563 -0.8919 21 1 0.6241 -2.5575 0.8881 22 1 2.8399 -3.5490 0.7804 23 1 0.7769 -6.3412 1.5650 24 1 2.2150 -5.3117 2.0898 25 1 1.5231 -8.1094 0.0795 26 1 2.7689 -7.9051 -1.1736 27 1 1.2566 -6.5250 -2.5133 28 1 0.4390 -8.0553 -2.1089 29 1 -1.1719 -6.3320 -1.6540 30 1 -0.5273 -6.8091 -0.0614 31 1 -0.5601 -4.3657 -0.1914 32 1 0.3294 -4.4294 -1.7293 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822057277.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:09 Heat of formation + Delta-G solvation = 4.479748 kcal Electronic energy + Delta-G solvation = -12468.161802 eV Core-core repulsion = 10428.318142 eV Total energy + Delta-G solvation = -2039.843661 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.45475 -34.47948 -32.82132 -31.54401 -29.62341 -26.05737 -24.46541 -22.04695 -21.59489 -20.23769 -17.77006 -16.53206 -15.49733 -14.71780 -14.36128 -13.95345 -13.65098 -13.23093 -12.61963 -12.43910 -12.36747 -11.66181 -11.47886 -11.20619 -10.79360 -10.73226 -10.63489 -10.49598 -10.25679 -9.96275 -9.61938 -9.24958 -9.05096 -8.44260 -7.10884 -6.02357 -4.04273 3.34200 3.37819 3.41139 4.21809 4.43818 4.89169 5.06644 5.10165 5.17130 5.33396 5.46138 5.54708 5.58690 5.78343 5.91404 5.95204 6.03285 6.14591 6.22631 6.39090 6.45263 6.48058 6.63358 6.67097 6.75301 7.29595 7.45959 7.79398 8.14129 8.39901 8.62636 9.04598 9.60280 11.08592 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.066745 B = 0.008154 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.406741 B = 3433.109619 C = 3617.995526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.658 5.658 11 C 0.090 3.910 12 C -0.229 4.229 13 C -0.149 4.149 14 H 0.097 0.903 15 C -0.082 4.082 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.080 4.080 19 H 0.262 0.738 20 H 0.034 0.966 21 H -0.012 1.012 22 H 0.331 0.669 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.865 -12.263 -0.595 12.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.079 0.921 9 C 0.069 3.931 10 N -0.286 5.286 11 C -0.003 4.003 12 C -0.269 4.269 13 C -0.169 4.169 14 H 0.116 0.884 15 C -0.120 4.120 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.118 4.118 19 H 0.071 0.929 20 H 0.052 0.948 21 H 0.005 0.995 22 H 0.149 0.851 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.797 -12.071 -1.286 12.166 hybrid contribution 0.199 0.927 1.069 1.429 sum 0.996 -11.144 -0.217 11.191 Atomic orbital electron populations 1.69955 1.06041 1.26875 1.50782 1.24976 0.94886 0.99303 0.95318 0.86543 0.79432 0.82674 0.78643 1.20154 1.21307 1.20297 1.21177 0.93487 0.90383 1.50562 0.92115 1.19582 0.90714 0.86763 0.96067 1.60505 1.20123 1.00060 1.47893 1.21151 0.94275 0.88386 0.96515 1.23811 1.03243 1.07405 0.92414 1.22401 0.98015 0.96033 1.00408 0.88438 1.20977 0.98070 0.95280 0.97650 1.21548 0.96180 0.99541 0.98295 1.21552 0.97768 0.96100 1.00207 1.20762 0.94235 0.96119 1.00655 0.92860 0.94783 0.99457 0.85143 0.89527 0.89579 0.92267 0.92133 0.91486 0.92509 0.91858 0.92415 0.91119 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.90 9.32 -34.44 -0.32 -15.22 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 5.18 4.55 -4.98 -0.02 5.16 16 10 N -0.66 -14.72 6.70 -102.55 -0.69 -15.41 16 11 C 0.09 1.68 2.75 -132.90 -0.37 1.32 16 12 C -0.23 -3.75 9.29 -26.72 -0.25 -3.99 16 13 C -0.15 -2.36 6.06 -90.87 -0.55 -2.91 16 14 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 15 C -0.08 -1.07 5.84 -26.94 -0.16 -1.23 16 16 C -0.12 -1.53 5.92 -26.64 -0.16 -1.68 16 17 C -0.12 -1.66 5.71 -26.78 -0.15 -1.81 16 18 C -0.08 -1.44 4.10 -27.41 -0.11 -1.55 16 19 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 20 H 0.03 0.96 6.66 -51.93 -0.35 0.61 16 21 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 22 H 0.33 7.14 8.37 -39.29 -0.33 6.81 16 23 H 0.09 1.31 7.27 -51.93 -0.38 0.94 16 24 H 0.09 1.40 8.00 -51.93 -0.42 0.99 16 25 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.77 7.12 -51.93 -0.37 0.40 16 31 H 0.07 1.37 7.74 -51.93 -0.40 0.96 16 32 H 0.07 1.43 7.59 -51.93 -0.39 1.03 16 LS Contribution 255.53 15.07 3.85 3.85 Total: -1.00 -29.62 255.53 -8.44 -38.05 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.13 Total: 3.21 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.19 Total: -20.38 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.05 Total: -41.62 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.62 -8.44 -38.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822057277.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.530 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds