Wall clock time and date at job start Mon Mar 30 2020 02:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00135 * 2 1 4 4 H 1.48500 * 109.47344 * 240.00225 * 3 2 1 5 5 H 1.48498 * 109.46972 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46835 * 119.99969 * 3 2 1 7 7 C 1.37879 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99395 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00318 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99708 * 179.97438 * 10 9 7 12 12 C 1.52310 * 115.91399 * 248.28508 * 11 10 9 13 13 C 1.52074 * 115.92780 * 179.97438 * 11 10 9 14 14 H 1.09003 * 117.25467 * 0.45804 * 13 11 10 15 15 C 1.52713 * 120.51849 * 210.74373 * 13 11 10 16 16 C 1.52875 * 110.15610 * 21.47137 * 15 13 11 17 17 C 1.53301 * 108.72981 * 305.38313 * 16 15 13 18 18 C 1.52075 * 114.63952 * 33.37934 * 11 10 9 19 19 H 0.97000 * 119.99401 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.47176 * 59.99649 * 9 7 2 21 21 H 1.09002 * 109.46660 * 299.99656 * 9 7 2 22 22 H 1.00900 * 111.00091 * 56.04250 * 10 9 7 23 23 H 1.08999 * 117.53586 * 146.09970 * 12 11 10 24 24 H 1.08999 * 117.53506 * 0.85478 * 12 11 10 25 25 H 1.09003 * 109.35182 * 261.26159 * 15 13 11 26 26 H 1.09004 * 109.24501 * 141.61454 * 15 13 11 27 27 H 1.09002 * 109.61898 * 65.20487 * 16 15 13 28 28 H 1.08998 * 109.61912 * 185.56675 * 16 15 13 29 29 H 1.09001 * 109.61709 * 194.26098 * 17 16 15 30 30 H 1.08994 * 109.62306 * 314.80586 * 17 16 15 31 31 H 1.08991 * 109.26851 * 287.10804 * 18 11 10 32 32 H 1.09006 * 109.26234 * 46.61007 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5053 -4.9070 -0.0020 12 6 1.6329 -5.7340 1.2707 13 6 2.3905 -6.1436 -0.0024 14 1 3.4689 -5.9855 0.0055 15 6 1.9225 -7.4321 -0.6754 16 6 0.8358 -7.1237 -1.7055 17 6 -0.2880 -6.3413 -1.0163 18 6 0.1887 -4.9139 -0.7630 19 1 -0.4849 0.8401 0.0004 20 1 0.6247 -2.5563 -0.8919 21 1 0.6241 -2.5575 0.8881 22 1 2.8399 -3.5490 0.7804 23 1 0.7769 -6.3412 1.5650 24 1 2.2150 -5.3117 2.0898 25 1 1.5231 -8.1094 0.0795 26 1 2.7689 -7.9051 -1.1736 27 1 1.2566 -6.5250 -2.5133 28 1 0.4390 -8.0553 -2.1089 29 1 -1.1719 -6.3320 -1.6540 30 1 -0.5273 -6.8091 -0.0614 31 1 -0.5601 -4.3657 -0.1914 32 1 0.3294 -4.4294 -1.7293 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822057277.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:09 Heat of formation + Delta-G solvation = -14.546379 kcal Electronic energy + Delta-G solvation = -12468.986837 eV Core-core repulsion = 10428.318142 eV Total energy + Delta-G solvation = -2040.668695 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.81876 -36.21791 -34.58570 -33.18950 -31.04269 -28.13089 -25.74091 -24.01875 -22.84013 -21.61736 -19.14634 -18.61520 -17.00634 -16.71999 -16.04101 -15.18780 -14.97679 -14.52843 -14.43959 -14.08520 -13.92693 -13.29855 -12.97927 -12.82828 -12.59740 -12.55671 -12.11306 -11.87811 -11.74151 -11.34693 -11.24782 -11.02609 -10.64209 -10.51397 -8.87511 -8.24292 -6.36167 1.39018 1.42943 1.51061 2.37974 2.84373 3.08369 3.46103 3.79193 3.81843 3.93504 4.21605 4.30004 4.37447 4.57446 4.69075 4.70701 4.81977 4.93652 5.01822 5.11441 5.17526 5.21692 5.25105 5.32901 5.41989 5.42149 5.52299 5.60642 6.00822 6.44312 6.70060 6.86538 7.34580 8.86938 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.066745 B = 0.008154 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.406741 B = 3433.109619 C = 3617.995526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.217 3.783 10 N -0.662 5.662 11 C 0.049 3.951 12 C -0.218 4.218 13 C -0.128 4.128 14 H 0.097 0.903 15 C -0.081 4.081 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.076 4.076 19 H 0.266 0.734 20 H 0.008 0.992 21 H -0.044 1.044 22 H 0.333 0.667 23 H 0.103 0.897 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 -13.571 -0.581 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.089 3.911 10 N -0.290 5.290 11 C -0.043 4.043 12 C -0.257 4.257 13 C -0.147 4.147 14 H 0.115 0.885 15 C -0.118 4.118 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.115 4.115 19 H 0.075 0.925 20 H 0.026 0.974 21 H -0.026 1.026 22 H 0.151 0.849 23 H 0.122 0.878 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.706 -13.412 -1.271 13.580 hybrid contribution -0.105 1.295 1.071 1.684 sum 1.601 -12.117 -0.199 12.224 Atomic orbital electron populations 1.70090 1.07771 1.28108 1.51198 1.25962 0.95835 1.03372 0.94431 0.85370 0.78134 0.77549 0.79146 1.19331 1.20518 1.19120 1.21561 0.93769 0.91705 1.51133 0.91999 1.19132 0.90560 0.88146 0.93250 1.60428 1.19678 1.00754 1.48176 1.21363 0.95608 0.87764 0.99601 1.23835 1.03817 1.06206 0.91854 1.22520 0.97543 0.95298 0.99314 0.88463 1.21065 0.98894 0.93760 0.98102 1.21550 0.95590 1.00402 0.97747 1.21537 0.98770 0.93232 1.01359 1.20698 0.93532 0.98615 0.98605 0.92541 0.97417 1.02606 0.84941 0.87847 0.89737 0.90252 0.90186 0.92973 0.89352 0.90577 0.91187 0.94012 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 2 C 0.00 0.14 5.46 84.65 0.46 0.61 16 3 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.54 -32.15 9.32 25.60 0.24 -31.91 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 9 C 0.22 12.11 4.55 85.56 0.39 12.50 16 10 N -0.66 -30.60 6.70 -478.34 -3.21 -33.81 16 11 C 0.05 1.85 2.75 2.69 0.01 1.85 16 12 C -0.22 -6.83 9.29 30.60 0.28 -6.55 16 13 C -0.13 -3.78 6.06 -10.96 -0.07 -3.85 16 14 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 15 C -0.08 -1.80 5.84 30.46 0.18 -1.62 16 16 C -0.12 -2.64 5.92 30.65 0.18 -2.46 16 17 C -0.11 -2.94 5.71 30.56 0.17 -2.77 16 18 C -0.08 -2.84 4.10 30.16 0.12 -2.72 16 19 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 20 H 0.01 0.47 6.66 -2.39 -0.02 0.45 16 21 H -0.04 -2.65 8.14 -2.39 -0.02 -2.67 16 22 H 0.33 14.72 8.37 -89.69 -0.75 13.97 16 23 H 0.10 2.89 7.27 -2.39 -0.02 2.88 16 24 H 0.08 2.67 8.00 -2.39 -0.02 2.65 16 25 H 0.08 1.52 8.06 -2.39 -0.02 1.51 16 26 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.36 8.06 -2.39 -0.02 1.34 16 28 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 1.70 7.12 -2.39 -0.02 1.68 16 31 H 0.04 1.72 7.74 -2.39 -0.02 1.71 16 32 H 0.05 1.93 7.59 -2.38 -0.02 1.91 16 Total: -1.00 -65.15 255.53 1.41 -63.73 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.34 Total: 16.91 kcal Atomic # 6 Polarization: -38.89 SS G_CDS: 1.97 Total: -36.92 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -2.92 Total: -90.90 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -65.15 1.41 -63.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822057277.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.188 kcal (2) G-P(sol) polarization free energy of solvation -65.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds