Wall clock time and date at job start Mon Mar 30 2020 02:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86809 * 119.99607 * 2 1 4 4 H 1.48502 * 109.46692 * 269.99560 * 3 2 1 5 5 H 1.48493 * 109.47140 * 30.00042 * 3 2 1 6 6 H 1.48501 * 109.46852 * 150.00309 * 3 2 1 7 7 C 1.37873 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99920 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99825 * 0.02562 * 7 2 1 10 10 N 1.46908 * 109.46687 * 179.97438 * 9 7 2 11 11 C 1.47480 * 110.99907 * 74.02784 * 10 9 7 12 12 C 1.53515 * 87.93050 * 138.70117 * 11 10 9 13 13 C 1.47486 * 110.99674 * 169.99818 * 10 9 7 14 14 H 1.09004 * 113.47436 * 336.12280 * 13 10 9 15 15 C 1.53001 * 113.47646 * 106.52615 * 13 10 9 16 16 C 1.53775 * 113.61524 * 279.14063 * 15 13 10 17 17 C 1.53965 * 87.01916 * 220.04474 * 16 15 13 18 18 C 1.53773 * 113.61454 * 181.52772 * 15 13 10 19 19 H 0.97001 * 120.00310 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.47596 * 59.99524 * 9 7 2 21 21 H 1.08997 * 109.46971 * 299.98802 * 9 7 2 22 22 H 1.09004 * 113.47564 * 253.46110 * 11 10 9 23 23 H 1.08993 * 113.47671 * 23.93538 * 11 10 9 24 24 H 1.09004 * 114.17359 * 220.32704 * 12 11 10 25 25 H 1.09003 * 114.34519 * 87.63133 * 12 11 10 26 26 H 1.09005 * 112.84550 * 50.33542 * 15 13 10 27 27 H 1.09004 * 113.61689 * 334.56099 * 16 15 13 28 28 H 1.09001 * 113.61706 * 105.47012 * 16 15 13 29 29 H 1.08994 * 113.53732 * 270.81249 * 17 16 15 30 30 H 1.08994 * 113.66593 * 139.92779 * 17 16 15 31 31 H 1.09004 * 113.61794 * 254.53275 * 18 15 13 32 32 H 1.08995 * 113.61652 * 25.43636 * 18 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 2.8372 -3.7710 1.3242 12 6 2.6866 -5.2895 1.1560 13 6 1.5187 -4.8985 0.2397 14 1 0.5699 -4.7915 0.7655 15 6 1.4064 -5.7723 -1.0113 16 6 0.2487 -5.3716 -1.9407 17 6 -0.0006 -6.8769 -2.1468 18 6 0.6578 -7.0943 -0.7741 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8895 21 1 0.6242 -2.5567 0.8904 22 1 3.8748 -3.4381 1.3522 23 1 2.2409 -3.3633 2.1404 24 1 2.3858 -5.8116 2.0644 25 1 3.5181 -5.7690 0.6393 26 1 2.3583 -5.8961 -1.5279 27 1 -0.5661 -4.8603 -1.4279 28 1 0.5727 -4.8541 -2.8437 29 1 0.5659 -7.3025 -2.9750 30 1 -1.0564 -7.1460 -2.1722 31 1 1.3115 -7.9658 -0.7365 32 1 -0.0448 -7.0550 0.0583 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885274459.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:59 Heat of formation + Delta-G solvation = 43.840803 kcal Electronic energy + Delta-G solvation = -12472.950354 eV Core-core repulsion = 10434.813517 eV Total energy + Delta-G solvation = -2038.136837 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.72070 -37.28489 -32.88545 -29.58276 -27.06287 -25.57412 -24.99881 -22.54575 -21.62883 -19.08904 -18.92329 -16.30868 -15.39889 -15.22660 -14.76548 -14.01972 -13.59454 -13.14778 -12.28054 -12.10697 -11.97388 -11.53873 -11.46473 -11.23311 -10.94021 -10.86500 -10.54827 -10.24769 -10.17780 -9.91856 -9.56928 -9.29739 -8.99076 -8.43738 -7.71912 -6.01676 -4.02955 3.32885 3.38392 3.42598 4.43774 4.72401 4.95235 5.05597 5.11757 5.21484 5.34089 5.47995 5.70187 5.80933 5.94527 6.03450 6.09268 6.10545 6.17399 6.28808 6.33691 6.43673 6.52618 6.61133 6.75819 6.83657 6.93134 7.29907 7.71299 7.95180 8.22480 8.51161 9.04919 9.61256 11.09561 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.049938 B = 0.009138 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.557335 B = 3063.229198 C = 3432.428785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.061 0.939 9 C 0.162 3.838 10 N -0.464 5.464 11 C 0.013 3.987 12 C -0.147 4.147 13 C 0.032 3.968 14 H 0.066 0.934 15 C -0.084 4.084 16 C -0.132 4.132 17 C -0.144 4.144 18 C -0.135 4.135 19 H 0.261 0.739 20 H 0.032 0.968 21 H -0.005 1.005 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.501 -11.647 -0.069 11.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.035 3.965 10 N -0.187 5.187 11 C -0.116 4.116 12 C -0.185 4.185 13 C -0.078 4.078 14 H 0.084 0.916 15 C -0.103 4.103 16 C -0.169 4.169 17 C -0.182 4.182 18 C -0.173 4.173 19 H 0.070 0.930 20 H 0.050 0.950 21 H 0.013 0.987 22 H 0.089 0.911 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.734 -11.365 -0.682 11.517 hybrid contribution -0.265 1.086 0.691 1.314 sum 1.469 -10.279 0.009 10.384 Atomic orbital electron populations 1.69957 1.06051 1.26719 1.51116 1.24993 0.94872 0.99327 0.95425 0.86502 0.79720 0.83090 0.78139 1.20613 1.21288 1.19872 1.21116 0.93442 0.90065 1.49995 0.92088 1.20189 0.91036 0.88890 0.96345 1.68879 1.22075 1.01598 1.26122 1.23435 1.00884 0.93700 0.93630 1.23221 0.99011 0.97199 0.99054 1.23293 0.96188 0.93669 0.94611 0.91628 1.22331 0.97898 0.94156 0.95902 1.22871 0.98814 0.95202 1.00051 1.22868 1.00209 0.97655 0.97443 1.22889 0.99436 0.97615 0.97336 0.92959 0.95011 0.98679 0.91100 0.92072 0.92101 0.89868 0.89250 0.90309 0.91616 0.90687 0.92051 0.92049 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.76 8.95 -34.44 -0.31 -15.07 16 8 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 9 C 0.16 4.35 4.58 -4.97 -0.02 4.32 16 10 N -0.46 -10.44 6.19 -237.92 -1.47 -11.91 16 11 C 0.01 0.25 7.30 -7.54 -0.06 0.20 16 12 C -0.15 -2.37 8.01 -26.20 -0.21 -2.58 16 13 C 0.03 0.59 2.72 -71.42 -0.19 0.40 16 14 H 0.07 1.26 7.77 -51.93 -0.40 0.86 16 15 C -0.08 -1.34 3.65 -89.81 -0.33 -1.67 16 16 C -0.13 -2.12 7.66 -25.82 -0.20 -2.32 16 17 C -0.14 -1.85 8.09 -25.82 -0.21 -2.06 16 18 C -0.13 -1.75 7.64 -25.92 -0.20 -1.95 16 19 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 20 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 21 H 0.00 -0.13 7.56 -51.93 -0.39 -0.52 16 22 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 23 H 0.06 1.26 7.70 -51.93 -0.40 0.86 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 26 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 27 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 263.01 15.07 3.96 3.96 Total: -1.00 -30.14 263.01 -9.00 -39.14 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.39 Total: -2.57 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -1.82 Total: -19.23 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.74 Total: -38.39 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.14 -9.00 -39.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885274459.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.976 kcal (2) G-P(sol) polarization free energy of solvation -30.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds